Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01649 ATGGCAGGGTTGTCCGTGAAAACCCCACCTCAAACGGCGCCGTTAAGCGTTTTCCTCACTGGACCGCCGGAGAATGAGCCCTCCGGCGACCACCGGAACCCTTCACCGGCGGCGAAGAGAACCGTCAAGAAGACACTGATCATTGACGAGTCCTCCCTTGACAACCCAGATTTGGGTCCGTTTCTTCTGAAGATGGCCCGAGATACGATAGCTTCGGGTGATGACCCGAATAAGGCATTGGATTATGCTATTCGGGCCTCCAAGACTTTTGAACGGGTATCGGGTCCGGGTCTGGATCTTTCCATGTGTCTCCACGTTGTTGCTGCCATCTACAGCAGTTTGGGGCGGTTGGATGAGGCGGTTGAGGCTTTGGAACGGTCCATTATGTTGTTGGATATTGAAAACGGGTCGGATCATACCATGGCCAAGTTTTCAGGGTACATGCAACTTGGTGATACTTATTCCATGATTGGTCACTTGGATAGATCCATTTCATGTTATGAATCGGGTTTGAAGATCCAAATGGAGGCTCTGGGTAAGTCCGACCCGAGAGTTGCAGAGACTTGCAGGTACTTAGCTGAAGCTCATGTTCAAGCCATGCAATTTGAGGAGGCAGAGCACTTCTGCAAAAAGACCCTTGAAATTCATAGGGAGCATTGCTCACCTGCTTCCCTTACAGAAGCAGCTGATAGGCGTCTCATGGCACTTATATGTGAGGCAAAGGGAGATTATGAACCAGCACTTGAGCACCTTGTCCTAGCTAGCATGTCAATGATTGCTAATGGCCAAGATAATGAAGTTGCAGCTATTGATGTTAGCATTGGAGATATTTACTTGTCACTATGCCGTTTTGATGAGGCTGTTTTTGCCTACCAGAAAGCACTAACAGTGTTCAAATCCACCAAGGGTGAAAATCACAGTTCTGTGGCATTAGTGTACATTCGCCTTGCTGAACTTTACTACAAGACAGGAAAATTAAGAGAGTCAAAATCCTATTGCGAAAATGCCTTAAGAATATATTGTAAACCTGTGCATGGAACAACAGCTGGAGAGATTGCAAGTGGGTTGACTGAAATCTCTACCATCTATGAAGCTCTAAATGAACCTGAGGAGGCACTGAAGCTATTGCAAAAGGCAGTGAAATTATTGGAGGATATCCCTGGACAATATAGGACAGTGGCAGGAATAGAAGCTCAAATGGGAGTGATGTTCTACGTGGTTGGGAGGTATATGGATGCTTGGAAATCTTTTGAGAATGCTATCACCAAGTTGAGAGCCAGTGGGGAGAAGAAATCTACCTTTTTTGGAGTTGTATTGAACCAAATGGGCTTGGCATGTGTGCAACTGTATAAAATAGGGGAAGCTGCCACACATTTTGAAGAAGCAAGAGACATATTGGAGAGGGAGTGTGGAACATATCATTTGGACACTCTTGGGGTGTATAGCAATCTTGCAGCAACTTATGATGCCATGGGGAGAGTTGAAGATGCCATTGAGATATTGGAATACATACTAAAGATGAGAGAAGAAAAACTTGGAACTGCAAATCCAGATGTTGATGATGAAAAGAAAAGACTATTTGAGCTTTTGAAGGAAGCAGGAAGAGTTCGGAATAGAAGGGGAAAATCACTTGAAAACCTTATAGATTCCAATTCCTTGAAGATGAAGAAGGAAGGAAAAAGGAGATGGGGTGCATTTGGTTTGAGAACTTGA 1713 0.4489 MAGLSVKTPPQTAPLSVFLTGPPENEPSGDHRNPSPAAKRTVKKTLIIDESSLDNPDLGPFLLKMARDTIASGDDPNKALDYAIRASKTFERVSGPGLDLSMCLHVVAAIYSSLGRLDEAVEALERSIMLLDIENGSDHTMAKFSGYMQLGDTYSMIGHLDRSISCYESGLKIQMEALGKSDPRVAETCRYLAEAHVQAMQFEEAEHFCKKTLEIHREHCSPASLTEAADRRLMALICEAKGDYEPALEHLVLASMSMIANGQDNEVAAIDVSIGDIYLSLCRFDEAVFAYQKALTVFKSTKGENHSSVALVYIRLAELYYKTGKLRESKSYCENALRIYCKPVHGTTAGEIASGLTEISTIYEALNEPEEALKLLQKAVKLLEDIPGQYRTVAGIEAQMGVMFYVVGRYMDAWKSFENAITKLRASGEKKSTFFGVVLNQMGLACVQLYKIGEAATHFEEARDILERECGTYHLDTLGVYSNLAATYDAMGRVEDAIEILEYILKMREEKLGTANPDVDDEKKRLFELLKEAGRVRNRRGKSLENLIDSNSLKMKKEGKRRWGAFGLRT* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01649 570 Pfam Tetratricopeptide repeat 267 341 - -
Rops4g01649 570 Pfam Tetratricopeptide repeat 438 510 - -
Rops4g01649 570 MobiDBLite consensus disorder prediction 1 39 - -
Rops4g01649 570 ProSiteProfiles TPR repeat profile. 268 301 IPR019734 GO:0005515
Rops4g01649 570 Gene3D Tetratricopeptide repeat domain 436 539 IPR011990 GO:0005515
Rops4g01649 570 ProSiteProfiles TPR repeat profile. 478 511 IPR019734 GO:0005515
Rops4g01649 570 Pfam Tetratricopeptide repeat 356 382 IPR019734 GO:0005515
Rops4g01649 570 SUPERFAMILY TPR-like 103 514 IPR011990 GO:0005515
Rops4g01649 570 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 35 552 - -
Rops4g01649 570 Gene3D Tetratricopeptide repeat domain 255 435 IPR011990 GO:0005515
Rops4g01649 570 Gene3D Tetratricopeptide repeat domain 144 254 IPR011990 GO:0005515
Rops4g01649 570 Gene3D Tetratricopeptide repeat domain 36 143 IPR011990 GO:0005515
Rops4g01649 570 ProSiteProfiles TPR repeat profile. 353 386 IPR019734 GO:0005515
Rops4g01649 570 Pfam MalT-like TPR region 106 254 IPR041617 -
Rops4g01649 570 SMART tpr_5 478 511 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 101 134 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 268 301 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 353 386 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 436 469 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 310 343 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 186 219 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 144 177 IPR019734 GO:0005515
Rops4g01649 570 SMART tpr_5 394 427 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01649 Rops-Chr4 39951415 39957077 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01649 - - cam:101489796 962.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01649 4 39951415 39957077 Rops4g01649 4 39951415 39957077 ECH