Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01607 ATGGCTTCGGAGGATGTGAAGACCGGTGAATCTGCGGTAACGAAGATCGTGAATCTGGCGGAGGAAGCGAAGCTTGCAAGAGAAGGTGTTGTTAAGGCTCCTAACTATGCTCTCGCTAGCATCTGCAAGTCGCTAATTGCTGGTGGAGTCGCCGGAGGAGTATCACGAACTGCAGTTGCTCCGCTGGAACGGTTGAAAATTTTGCTGCAGGTCCAGAATCCTCATAACATAAAATACAATGGAACAATACAAGGCCTGAAATATATATGGAGAACTGAAGGTTTCCGTGGACTGTTTAAAGGGAACGGCACTAATTGTGCGCGGATTGTCCCTAATTCTGCAGTGAAGTTTTTCAGTTATGAGCAAGCTTCTAAAGGTATACTGCATATGTATCAGCAGCAAACTGGAAATGAGGATGCTCAGCTGACTCCTCTTCTACGTCTTGGAGCTGGAGCATGTGCTGGAATAATTGCTATGTCTGCAACTTATCCAATGGATATGGTTCGAGGCAGGATAACTGTCCAGACTGAGAAATCGCCTTATCAATACAGAGGAATGTTCCATGCTTTGTCTACTGTGCTTAGGGAAGAAGGTCCACGTGCTTTATATAAGGGCTGGCTTCCTTCAGTGATTGGAGTTATTCCGTATGTGGGTCTCAACTTTGCTGTCTATGAGTCTCTGAAAGATTGGTTAGTTAAATCCAAACCATTTGGTCTAGTTCAAGATAATGAGTTGAGTGTGACAACACGCCTGGCTTGTGGTGCTGCTGCTGGAACCGTTGGACAAACTGTTGCTTACCCTCTTGATGTCATTCGTCGAAGAATGCAGATGGTTGGTTGGAGCCATGCTGCTTCTGTTATAACTGGTGATGGAAGAAAAGTCCCGCTTGAATACACCGGAATGATTGATGCATTTAGGAAAACTGTTCGGCATGAGGGATTTGGTGCATTATATAAGGGTCTGGTGCCCAATTCTGTAAAGGTGGTCCCATCCATAGCAATTGCATTTGTATCATACGAGGTGGTGAAGGACATTTTAGGAGTTGAGATCAGAATATCAGACTAG 1065 0.4498 MASEDVKTGESAVTKIVNLAEEAKLAREGVVKAPNYALASICKSLIAGGVAGGVSRTAVAPLERLKILLQVQNPHNIKYNGTIQGLKYIWRTEGFRGLFKGNGTNCARIVPNSAVKFFSYEQASKGILHMYQQQTGNEDAQLTPLLRLGAGACAGIIAMSATYPMDMVRGRITVQTEKSPYQYRGMFHALSTVLREEGPRALYKGWLPSVIGVIPYVGLNFAVYESLKDWLVKSKPFGLVQDNELSVTTRLACGAAAGTVGQTVAYPLDVIRRRMQMVGWSHAASVITGDGRKVPLEYTGMIDAFRKTVRHEGFGALYKGLVPNSVKVVPSIAIAFVSYEVVKDILGVEIRISD* 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01607 354 Pfam Mitochondrial carrier protein 40 127 IPR018108 -
Rops4g01607 354 Pfam Mitochondrial carrier protein 244 346 IPR018108 -
Rops4g01607 354 Pfam Mitochondrial carrier protein 142 234 IPR018108 -
Rops4g01607 354 SUPERFAMILY Mitochondrial carrier 40 341 IPR023395 -
Rops4g01607 354 FunFam Mitochondrial substrate carrier 37 348 - -
Rops4g01607 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 245 345 IPR018108 -
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 254 276 IPR002067 GO:0055085
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 157 175 IPR002067 GO:0055085
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 44 57 IPR002067 GO:0055085
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 203 221 IPR002067 GO:0055085
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 101 121 IPR002067 GO:0055085
Rops4g01607 354 PRINTS Mitochondrial carrier protein signature 57 71 IPR002067 GO:0055085
Rops4g01607 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 39 126 IPR018108 -
Rops4g01607 354 PANTHER SOLUTE CARRIER FAMILY 25 39 348 - -
Rops4g01607 354 Gene3D Mitochondrial carrier domain 37 348 IPR023395 -
Rops4g01607 354 ProSiteProfiles Solute carrier (Solcar) repeat profile. 142 230 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01607 Rops-Chr4 39313609 39319418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01607 16 349 EF-hand Containing Proteins AT5G51050 37.870 5.33e-68 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01607 K14684 - gmx:100814032 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01607 4 39313609 39319418 Rops4g01607 4 39313609 39319418 ECH
Rops8g04220 8 84692881 84698561 Rops4g01607 4 39313609 39319418 PCT