Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01475 ATGGAGCTTGTAGATGATGGAAAAGAATCATCAAATATTGTTGATGAAGTAGCAGGCACTAATTCTCCACTCATTTGTGGCCTTCCAGATGATATTTCTCTTTTGTGCCTTGCAAGAGTTCCCAGAAAATATCATTCAGTCCTGAAGTGTGTCTCAAAAAGATGGAGGGACTTAGTTTGCAGCGAAGAGTGGCTTTATCATCGTAAAAAGCATAAACTTGATGAGACCTGGATCTATGCTTTGTGCAGAGACAAATTAGATCAGATTCACTGTTATGTTTTGGATCCAACCTCGTCAAGAAAATGTTGGAAGCCCATTCATGGGCTTCCACCTCACATCATGAAAAGGAAAGGCATGGGTTTTGAAGCTTTGGGAAATAAGCTATTCTTATTGGGTGGCTGTGGCTGGTCTGAAGATGCTACTGATGAGGTTTATTCATACAATGCTTCCTTGAACTCTTGGGTTGAAGCTGCTTCCTTGTCAACTGCTAGGTGCTACTTTGCTTGTGAAGTTTTGGATGAAAAACTATTTGCTATAGGTGGCATAGGTTCAAATTCAAGTGATCCTCATTCTTGGGATACTTTTGACCCTTGTACAAATGCTTGGACATCTCATAGAGATCCTAACATTGTTCCTGAAAATGAAGATTCAGTAGTTATGGATGGGAAGATATACATCCGATGTGGCAAATCTCCTGTAACTCCCCATGTATATGTTGTTGTATATGATCCATCAAGTGGCACATGGCAGCATGGAGATGCTGACATGGTTTCAGGATGGAGAGGTCCTGCAGTTGTTGTTGATGGGGTCCTTTTTGTTTTGGATCAGAGTTCAGGAACAAGGTTAATGATGTGGAATAAAGAGAGACATGAATGGATACCTATTGGAAAGTTGTCACCATTGCTTACAAGACCACCCTGCCAACTTGTTGCAGTTGGTAGAAGCATTTTTGTTGTTGGGAAAGGGCTTAGCACTGTGGTTGTTGATGTTGGTGATTTGGGGAATGTGGGAAGGGTGATTATGGGTTCTTCTATACCCAAATTAATTTCTGATCATGATGTAATTAGTTGTAAATGCTTGGCAATCTGA 1089 0.4077 MELVDDGKESSNIVDEVAGTNSPLICGLPDDISLLCLARVPRKYHSVLKCVSKRWRDLVCSEEWLYHRKKHKLDETWIYALCRDKLDQIHCYVLDPTSSRKCWKPIHGLPPHIMKRKGMGFEALGNKLFLLGGCGWSEDATDEVYSYNASLNSWVEAASLSTARCYFACEVLDEKLFAIGGIGSNSSDPHSWDTFDPCTNAWTSHRDPNIVPENEDSVVMDGKIYIRCGKSPVTPHVYVVVYDPSSGTWQHGDADMVSGWRGPAVVVDGVLFVLDQSSGTRLMMWNKERHEWIPIGKLSPLLTRPPCQLVAVGRSIFVVGKGLSTVVVDVGDLGNVGRVIMGSSIPKLISDHDVISCKCLAI* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01475 362 CDD F-box_AtAFR-like 24 64 - -
Rops4g01475 362 SMART kelc_smart 127 174 IPR006652 GO:0005515
Rops4g01475 362 SUPERFAMILY F-box domain 23 77 IPR036047 GO:0005515
Rops4g01475 362 Gene3D - 66 334 IPR015915 GO:0005515
Rops4g01475 362 SUPERFAMILY Kelch motif 88 322 IPR015915 GO:0005515
Rops4g01475 362 PANTHER OS02G0202900 PROTEIN 16 336 IPR045887 -
Rops4g01475 362 Pfam F-box domain 26 61 IPR001810 GO:0005515
Rops4g01475 362 SMART fbox_2 28 68 IPR001810 GO:0005515
Rops4g01475 362 Pfam Kelch motif 163 203 IPR006652 GO:0005515
Rops4g01475 362 Pfam Kelch motif 116 161 IPR006652 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01475 Rops-Chr4 37465879 37469058 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01475 28 303 Miscellaneous Gene Families AT4G33900 26.246 1.93e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01475 - - gmx:100798211 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01475 4 37465879 37469058 Rops4g01475 4 37465879 37469058 ECH