Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01446 ATGACAGAAGCAACAAAAAGGTATGCAGTTGTGACAGGAGCAAATAAGGGAATAGGATTTGCAATAAGTAAGCAATTGGCTTCTAATGGGATCACAGTGGTGGTAACAGCCAGAGATGAGAAGAGGGGCCTTGAAGCTGTTGACAAACTAAAACAGCTTGGTCTGTCTGGCCATGTGGTTTTTCATCAACTTGATGTCACAGATCCTGCAAGTATAGCATCACTTGCAGATTTCATCAGAACCCAATTTGGAAAGCTTGATATCTTGGTAAACAATGCAGGGATTACTGGAGCACATGTGAACAGTGAGGCTTTGGCTGCTGCAGGCGTTGCGGAAAATGCTGGCCATGTTGATTGGAGTAAAATAATATCTGAAAACTATGAATTAGCTGAAGAAGGTCTTAAGACAAACTACTATGGAGCCAAGGAATCCACCAAAGCGCTGATTCCCCTTCTCCAGTTATCAGACTCACCAAAAATTGTCAATGTTTCCTCATCCATGGGAAGGCTGGAGAATATACCACAAGGATGGCCAAAAGAAGTGCTAAGTGATGTTGAAAACCTTACAGAAGAAAAGATTGATGACCTTTTGAATGAATTTCTAAAGGATTTAAAAGAGGGTTCACTAGAAACCAAAGCTTGGCCTCTTCTTCTGTCTGCATATGCTGTCTCAAAAGCTGCTCTGAATGCCTACACAAGGATTCTGGCCAAGAAGTACCCTTCATTCTGCATCAATGCTGTTTGTCCTGGCTATGTGAAAACAGACATAAACCACAACACTGGTATTCTGACACCTGATGAAGGTGCTGAACCTGCTGTGAAGTTGGCACTGCAACCCAATGCTAGTACTTCTGGCCATTTTTTCGTGCGAACTGAAGAGAGGTCATTTTGA 891 0.4254 MTEATKRYAVVTGANKGIGFAISKQLASNGITVVVTARDEKRGLEAVDKLKQLGLSGHVVFHQLDVTDPASIASLADFIRTQFGKLDILVNNAGITGAHVNSEALAAAGVAENAGHVDWSKIISENYELAEEGLKTNYYGAKESTKALIPLLQLSDSPKIVNVSSSMGRLENIPQGWPKEVLSDVENLTEEKIDDLLNEFLKDLKEGSLETKAWPLLLSAYAVSKAALNAYTRILAKKYPSFCINAVCPGYVKTDINHNTGILTPDEGAEPAVKLALQPNASTSGHFFVRTEERSF* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01446 296 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Rops4g01446 296 PRINTS Glucose/ribitol dehydrogenase family signature 221 240 IPR002347 -
Rops4g01446 296 PRINTS Glucose/ribitol dehydrogenase family signature 152 168 IPR002347 -
Rops4g01446 296 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Rops4g01446 296 PRINTS Glucose/ribitol dehydrogenase family signature 240 257 IPR002347 -
Rops4g01446 296 Gene3D - 1 296 - -
Rops4g01446 296 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 208 236 IPR020904 GO:0016491
Rops4g01446 296 Pfam short chain dehydrogenase 8 171 IPR002347 -
Rops4g01446 296 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 293 - -
Rops4g01446 296 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Rops4g01446 296 CDD carb_red_PTCR-like_SDR_c 7 288 IPR045313 GO:0016616
Rops4g01446 296 FunFam (+)-neomenthol dehydrogenase 2 296 - -
Rops4g01446 296 Pfam Enoyl-(Acyl carrier protein) reductase 218 259 - -
Rops4g01446 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Rops4g01446 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 166 IPR002347 -
Rops4g01446 296 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 221 240 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01446 Rops-Chr4 36843522 36848898 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01446 10 261 Acyl Lipid Metabolism Gene Families AT1G24360 22.353 3.57e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01446 K15095 - gmx:100803877 473.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01446 4 36843522 36848898 Rops4g01446 4 36843522 36848898 ECH