Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01444 ATGTTGGGAACAACTTCACAATCTTTCTTTCTTCTTATCCTTGTTTTCATCTTTGGTCATTTATCATCACATTCCAATGCTTACCCTCTATCAACTCAGAGTAGATGGATCATAGATGAATCCACAGGGCAACGTGTCAAACTTGTATGTGGCAATTGGGCTGGTCACCTTCAACCAATGATCCCTGAGGGTCTTGACAGAAGACCCTTGAAGGACCTTGTTGGTGAGCTTGTGGAACACAAGTTCAACTGTGTTCGTCTCACCTATGCAATTTACATGTGGACACGCCATGGCCATCACATTGTGAATGATACCTTTAATGGTTTGGATGCACCTGAGGTGGTTGCTGGAATAACCAAGAACAATCCTTCTGTGTTGAAGATGACACATATTGAGGCCTTTGAAGCTGTGATTCATGAACTTGGGTCTCAAAATGTGAAAGTGTTGTTTGATAACCATGTTAGTGAGCCAAAGTGGTGTTGTAATGATGATGATGAGAATGGATTCTTTCATGATAGGCACTTTGATCCTGAGGAATGGGTGCAGGGTCTTACTTTGGCAGCCAAGCATTTTGCTGGACATCATCCTGTTGTGGCAATGAGCTTGAGGAATGAATTGCATGGTCCACGCCAAAATCTGAATGATTGGTACAAGTACATGAGTCAAGGAGCATTAGCCATCCACAAGGCAAACCCAAATGTGCTCGTGGTTATCTCAGGTTTGAACTATGACACTGAGCTTCAGTTTTTAAGGAATAGACCATTGAAGATAGACTTGGGTAAAAAGATGGTCTTTGAGACACATTTGTACTCATGGTCTGGAATTGGGACACTCAAATTGAAAGAGATTTGGACTAAGCAACCATTGAACAGGATATGTGCCAATAGCATTAAGGGGTTAGATTACCGAGCTGGGTTCCTTACCACTGGTAAGAATGCAGTTCCTTTAATCTTTACTGAGTTTGGGTTTGATCAAACTGGTTCCTCAGTGGAAGACAACAAGTTCTTGACATGCCTTCAAACCTATCTTGTTGGAAGAGACTTGGATTGGGGTTTGTGGGCATTTCATGGTAGCTATTATGTGAGAGAAGACAAAGTTCAACTTGATGAGACATTTGGTGTAATGGATGCCACATGGGACAACCTGAGAGACCCAAATTTCACTGACAAGTTCCAACTTTTACAAAGGAAGAACCAAGATCCTACTTCCAAAGTCCCCAAAGCATTTATCATGTACCATCCACTAAGTGGTCAATGTGCCCAAGTGAATAACAAGAATGAACTTGAAATTGGAAGCTGTGACAACCAAGACAGATGGATTTATGGTGAAGATAGGTCTCAAATCCTTTTGAATGGTACTAAGAAGTGCTTAACTGCCTCTGGTGAAGGGCTTCCATCTACTGTTTCTGATGATTGCCAAAGCAAGAACAGTTCATGGAAATCTGTTTCACTTTCTAAACTTCATTTGGCTACTATGGATCACGATGGGAAACAACTTTGTTTGCAGAAGGATTCCAACTCATCCAGCATTGTGACTTCAAAATGTATCTGCATAAATGATGATTCTCTATGTTTGGATGATCCCCAAAGCCAATGGTTCCAGCTTGTTCCCACCAATGTGTAG 1623 0.4153 MLGTTSQSFFLLILVFIFGHLSSHSNAYPLSTQSRWIIDESTGQRVKLVCGNWAGHLQPMIPEGLDRRPLKDLVGELVEHKFNCVRLTYAIYMWTRHGHHIVNDTFNGLDAPEVVAGITKNNPSVLKMTHIEAFEAVIHELGSQNVKVLFDNHVSEPKWCCNDDDENGFFHDRHFDPEEWVQGLTLAAKHFAGHHPVVAMSLRNELHGPRQNLNDWYKYMSQGALAIHKANPNVLVVISGLNYDTELQFLRNRPLKIDLGKKMVFETHLYSWSGIGTLKLKEIWTKQPLNRICANSIKGLDYRAGFLTTGKNAVPLIFTEFGFDQTGSSVEDNKFLTCLQTYLVGRDLDWGLWAFHGSYYVREDKVQLDETFGVMDATWDNLRDPNFTDKFQLLQRKNQDPTSKVPKAFIMYHPLSGQCAQVNNKNELEIGSCDNQDRWIYGEDRSQILLNGTKKCLTASGEGLPSTVSDDCQSKNSSWKSVSLSKLHLATMDHDGKQLCLQKDSNSSSIVTSKCICINDDSLCLDDPQSQWFQLVPTNV* 541
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01444 540 Gene3D Glycosidases 27 397 - -
Rops4g01444 540 PANTHER CELLULASE FAMILY PROTEIN (AFU_ORTHOLOGUE AFUA_5G14560) 15 539 - -
Rops4g01444 540 SUPERFAMILY (Trans)glycosidases 27 384 IPR017853 -
Rops4g01444 540 Pfam Cellulase (glycosyl hydrolase family 5) 69 354 IPR001547 GO:0004553|GO:0071704
Rops4g01444 540 SUPERFAMILY Ricin B-like lectins 405 515 IPR035992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01444 Rops-Chr4 36819125 36821224 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01444 27 536 Glycoside Hydrolase AT1G13130 39.341 6.94e-141 416
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01444 K01179 - egr:104441706 597.816