Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01435 ATGTCACAACTGAAGATGGGAGAAGCTACAGAAAGGTATGCAGTAGCGACTGGGGCAAACAAAGGAATTGGATTAGAGATAGTGAAGCAGTTAGCTTCAGCTGGGATCAAGGTGGTGCTTACAGCAAGAGATGAGAAGAGGGGTCTTCATGCTTTGCAATCACTCAAAGCCTCTGGTCTATCTGACCTTGTAGTTTTTCATCAGCTGGATGTGGCTGATACTGCAAGTGTAGCTTCTCTGGCAGATTTTGTCAAATCCAAATTTGGGAAACTTGATATTCTGGTTAACAATGCAGGGATTGGTGGAGCCATAATTAAAGACAATGATTTATTAACATCAGCTATCATGAATCGTGGGGCATTATCAGATGATGACGCGAGAAAGGCATTTACTCAAACATACGAGTTAGCTGAAGAATGCTTGCAAATAAATTATTATGGTGCTAAAATAACTACCGAGTCCCTTCTGCCCCTCCTTCAGTTATCTGATTCACCAAGAATTGTGAATGTATCATCCTTTCTGGGGAAGTTAGAGAGTGTACCAAATGGTTGGGCTAAAGGAGTATTGAGTGATGCTGATAACCTTACAGAAGAGAAAGTGGATGAAGTATTGAAGAAGTTTCTTGAAAATTTCAAAGAAGGTTCATTAGAAAGCAAAGGGTGGCCTGGGACTATGAGTGCCTATATTATATCTAAAGCTGCTTTGAATGCCTATACAAGAATTCTTGCTAAGAATTTCCCTAATTTTTGCATCAATAGTGTTTGCCCTGGTTATGTCAAGACAGATATAACTAACCATACTGGCTTCTTCACAGTTGAAGAAGGTGCTGTTCATCCTGTTAGGCTAGCATTGCTTCCCAATGGAAGTCCATCTGGCCTCTTCTATTACCGCAGTGAAGTGTGTTCCTTTTGA 912 0.4068 MSQLKMGEATERYAVATGANKGIGLEIVKQLASAGIKVVLTARDEKRGLHALQSLKASGLSDLVVFHQLDVADTASVASLADFVKSKFGKLDILVNNAGIGGAIIKDNDLLTSAIMNRGALSDDDARKAFTQTYELAEECLQINYYGAKITTESLLPLLQLSDSPRIVNVSSFLGKLESVPNGWAKGVLSDADNLTEEKVDEVLKKFLENFKEGSLESKGWPGTMSAYIISKAALNAYTRILAKNFPNFCINSVCPGYVKTDITNHTGFFTVEEGAVHPVRLALLPNGSPSGLFYYRSEVCSF* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01435 303 CDD carb_red_PTCR-like_SDR_c 12 300 IPR045313 GO:0016616
Rops4g01435 303 Gene3D - 4 303 - -
Rops4g01435 303 PRINTS Glucose/ribitol dehydrogenase family signature 13 30 IPR002347 -
Rops4g01435 303 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Rops4g01435 303 PRINTS Glucose/ribitol dehydrogenase family signature 159 175 IPR002347 -
Rops4g01435 303 PRINTS Glucose/ribitol dehydrogenase family signature 247 264 IPR002347 -
Rops4g01435 303 PRINTS Glucose/ribitol dehydrogenase family signature 228 247 IPR002347 -
Rops4g01435 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Rops4g01435 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 228 247 IPR002347 -
Rops4g01435 303 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 165 173 IPR002347 -
Rops4g01435 303 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 13 289 IPR036291 -
Rops4g01435 303 FunFam (+)-neomenthol dehydrogenase 7 303 - -
Rops4g01435 303 Pfam short chain dehydrogenase 14 178 IPR002347 -
Rops4g01435 303 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 12 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01435 Rops-Chr4 36703075 36706526 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01435 14 265 Miscellaneous Gene Families AT2G29150 28.235 1.94e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01435 K15095 - gmx:100801677 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01435 4 36703075 36706526 Rops4g01435 4 36703075 36706526 ECH