Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01420 ATGGCTACTTCTTCTTTTGCTTCGTTCGCTCGCTTCTCTATTAGACCTTCTTCTGAATCTCAATTTCTCATCTTCAACTTCCCTCCTCGAACTGGAACCCTCCATTCTCGAACCGGACCTGCCCGGTTCAGGTGTTTGGCCGGTCAGACCGGGTTCTTCACGAAACTAGGCCGGTTGTTAAAGGAGAAAGCGAAGAGCGATGTGGAGAAGATATTCTCGGGTTTCTCGAAGACACGTAACAACCTCGCCGTCATCGATGAGCTCCTTCTCTATTGGAACCTCTCCGACACCGACCGAGTCCTCGACGAAATCGAAGAGGTTCTTTTAGTGTCTGATTTTGGGCCAAGAATTAGTATAAAGATAGTGGAGAATTTGCGCGAGGACATTTTGTCAGGGAAGCTTAAATCAGGAAATGAGATAAAGGAAGCATTGAAGAGGAATGTTTTGGAATTGTTAACCAACAAGGGGAGTAAAACTGAACTTCAACTTGGATTCAGGAAGCCAGCTGTAATAATGATAGTTGGTGTTAATGGTGGTGGGAAGACAACATCTTTGGGAAAGCTGGCATATAGATTGAAGAATGAAGGGGCTAAGATATTGATGGCAGCTGGTGATACATTCAGAGCAGCTGCTAGTGACCAGCTGGAAATATGGGCTGAAAGGACTGGGTGTGAGATTGTTGTGGCTGAATCTGAGAAAGCTAAAGCATCCTCAGTGCTTTCCCAGGCTGTAAAAAAAGGAAAAGAGCTAGGTTTTGATATTGTATTATGTGATACATCAGGACGTTTACACACTAATTACAGCCTAATGGAAGAGTTGATTTCTTGTAAAAAGGCTGTTGCTAAAGTAGTTCCTGGTGCACCTAATGAGATCCTGCTGGTTCTAGATGGGACTACTGGTTTGAATATGTTGCCACAAGCAAGAGAATTCAACGAAGTTGTGGGTGTTACTGGTTTAGTATTGACCAAATTGGATGGTTCTGCTAGAGGTGGCTGTGTGGTCAGTGTGGTTGATGAGCTTGGAATCCCTGTAAAATTTGTTGGTGTTGGTGAAGGTGTTGAAGACCTTCAACCTTTTGATGCAGAGGCCTTTGTCAATGCCATTTTTATGTAA 1113 0.4385 MATSSFASFARFSIRPSSESQFLIFNFPPRTGTLHSRTGPARFRCLAGQTGFFTKLGRLLKEKAKSDVEKIFSGFSKTRNNLAVIDELLLYWNLSDTDRVLDEIEEVLLVSDFGPRISIKIVENLREDILSGKLKSGNEIKEALKRNVLELLTNKGSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAYRLKNEGAKILMAAGDTFRAAASDQLEIWAERTGCEIVVAESEKAKASSVLSQAVKKGKELGFDIVLCDTSGRLHTNYSLMEELISCKKAVAKVVPGAPNEILLVLDGTTGLNMLPQAREFNEVVGVTGLVLTKLDGSARGGCVVSVVDELGIPVKFVGVGEGVEDLQPFDAEAFVNAIFM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01420 370 SMART SRP54_3 168 370 IPR000897 GO:0005525|GO:0006614
Rops4g01420 370 FunFam Cell division FtsY, chloroplastic-like protein 58 159 - -
Rops4g01420 370 Gene3D - 58 159 IPR042101 -
Rops4g01420 370 Pfam SRP54-type protein, GTPase domain 168 369 IPR000897 GO:0005525|GO:0006614
Rops4g01420 370 SMART SRP54_N_2 71 152 IPR013822 GO:0005525|GO:0006614
Rops4g01420 370 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 343 356 IPR000897 GO:0005525|GO:0006614
Rops4g01420 370 NCBIfam signal recognition particle-docking protein FtsY 97 369 IPR004390 GO:0006614
Rops4g01420 370 Gene3D - 160 370 IPR027417 -
Rops4g01420 370 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 68 145 IPR036225 -
Rops4g01420 370 FunFam Signal recognition particle receptor FtsY 161 370 - -
Rops4g01420 370 SMART AAA_5 167 340 IPR003593 GO:0016887
Rops4g01420 370 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 368 IPR027417 -
Rops4g01420 370 PANTHER SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA 42 369 - -
Rops4g01420 370 CDD FtsY 169 368 - -
Rops4g01420 370 Pfam SRP54-type protein, helical bundle domain 97 146 IPR013822 GO:0005525|GO:0006614
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01420 Rops-Chr4 36465648 36471532 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01420 K03110 - gmx:100791073 660.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01420 4 36465648 36471532 Rops4g01420 4 36465648 36471532 ECH