Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Rops4g01417 | ATGGAGGCTACGAAATCGAGAACTCTAGAGGTGACGGTTCAATCAGCGGCGGGTCTCCACGTGAACGGAAAGCCGGTGACGAAGAACGCCTTTGTGGTGGTTCGCGCGGAGTCGATAACGAGCCACACGACGGCGATGAGTGGCGGAGACGGCGGCGAAGGAGGATCCCATTCATGGAACGAGAAGTTCTTGGTGGAGTTGGCAACGCAAACAAGGTCCATAACGTTCGAGGTGAAATACAAAACGGAAAATGGAATAGTGAAAGACATTGGTGTTGCGAGAATAGCGGTTTCGGATTTTCTAGGTGGGTCGGTGCCAGATTCTAGCTTACAGTGTTTGAGTTACAGGTTGAGGGATTGGGATGGCTTGCAAAATGGGGTCGTCAATTTCTCCGTCAGGGCGGTGGAGCCACCTTTCGCCGACGAAGATTCTGGCAATGAAGTTGTTACTGGCATTCCTAATTGCTGGAACAACGGCGCCACCAGCAGCAACGTTTGA | 498 | 0.5221 | MEATKSRTLEVTVQSAAGLHVNGKPVTKNAFVVVRAESITSHTTAMSGGDGGEGGSHSWNEKFLVELATQTRSITFEVKYKTENGIVKDIGVARIAVSDFLGGSVPDSSLQCLSYRLRDWDGLQNGVVNFSVRAVEPPFADEDSGNEVVTGIPNCWNNGATSSNV* | 166 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Rops4g01417 | 165 | Gene3D | C2 domain | 6 | 133 | IPR035892 | - | |
| Rops4g01417 | 165 | ProSiteProfiles | C2 domain profile. | 1 | 110 | IPR000008 | - | |
| Rops4g01417 | 165 | SMART | C2_3c | 8 | 109 | IPR000008 | - | |
| Rops4g01417 | 165 | PANTHER | INGRESSION PROTEIN FIC1 | 7 | 137 | - | - | |
| Rops4g01417 | 165 | Pfam | C2 domain | 8 | 106 | IPR000008 | - | |
| Rops4g01417 | 165 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 6 | 135 | IPR035892 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Rops4g01417 | Rops-Chr4 | 36434786 | 36435447 | Dispersed/Tandem |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Rops4g01417 | - | - | gmx:102665635 | 197.593 |