Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01361 ATGGCGGACCATGACATCACCTCCCCGCTGCTATCCTCCGATCACCTGATCGTCACAGTTGATTCCTCCTCCGACGCCGATTCAGGTGGTGGTTTTGCGGCGGTGAATCCGTTTGTTTCGATTGGGAGTGAGGGTGAGTTGAGGGTGCCGGCGGGGATAACGGTGGACCCGTTTAAGAACCGGACGGCGAGGATAGAGGGGGTGTATGAGTGGGTGAAGGTGGTGGTGTTTTTGCCAGTTGCGGTGGTGAGATTGGTGTTGTTTGGGTTGTGCCTTGCGGTAGGGTATGTAGCAACGAGGTTGGCGCTTCAAGGGTGGAAAGACAAGGATAACCCTATGCCTAAGTGGAGGTCTAATTTTATGTGGGTCACAAGATTGTCTGCCAGATGCATTCTCTTCTCTTTCGGCTATCAGTGGATAAGACGGAAGGGAAGACCTGCACCAAGGGAAGTTGCTCCAATAATTGTATCTAATCATGTATCTTATATTGAGCCAATCTTCTATTTCTATGAATTATTTCCCACCATTGTGGCGTCTGATTCTCATGATTCCATACCTTTTGTTGGCACCATTATTAGAGCAATGCAGGTCATATATGTTAACAGGTTCTCACCATCGTCAAGGAAGCAGGCTGTCAGAGAAATAAAGAGAAGGGCTTCTTGCGATAGATTTCCTCGAGTACTGTTATTTCCTGAGGGAACTACAACTAATGGCAGAAACCTTATCTCCTTCCAACTCGGTGCATTTATTCCTGGGTACCCTATCCAGCCTATAATTGTACGCTATCCTCATGTGCACTTTGATCAATCTTGGGGTCATGTTTCTTTGGCAAAGCTTATGTTCAGAATGTTCACTCAGTTTCACAACTTCTTTGAGGTAGAATATCTTCCTGTCATTTCACCCCTGGATGATAAGGAAACTGCTGTACATTTTCGTGAGAGGGCTAGCCGTGCCATTGCAACTGCAATGAATGTGGTCCAAACTGGGCATTCTTATGGGGACATTATGCTTTATACAAAAGCACAAGAAGCAAAACAGGAGAACCCCTCAAGTTATATGGTTGAAATGGCCAAGGTGGAATTGTTATTTCATATCAGCAGCCTGGAAGCTGTGGACTTTCTGGATACATTCTTGGCTATGAATCCTGATCCCAGTGGTCGGGTTCAATATCATGACTTTTTGAGGGTTTTAAGACTTAAGGCTTGCCCTCTATCTGAAAAGATATTTGCATTCATTGATGTGGAGAAGAGCAGGACGATTACATTCAGACAGTTCTTGTTTGGATCTGCACACGTCTTGAAGCAGCGGGGGTTCCGTCAAGCCTGTGAAGTAGCCTTTGCTGAGTGTGGTGGTGCAGTAAAGGGCTACATTGATGAACAAGAATTGCGAAAGTTCATCCAATCTGCTATCCACAGATGGAATGAGGATGAGGTCCATGACCTTTATGTGCTATTTGATAGCAATAATGATGGAAGAATTAACAAGGATGACTTTCTTTCATGCCTTAGAAGAAATCCTCTTCTCATAGCCCTTTTTACACCTCAACCTCAGCACAAGGAATTGGTTGGTAATGGAGTGCATGAGATAGTGTGA 1593 0.4507 MADHDITSPLLSSDHLIVTVDSSSDADSGGGFAAVNPFVSIGSEGELRVPAGITVDPFKNRTARIEGVYEWVKVVVFLPVAVVRLVLFGLCLAVGYVATRLALQGWKDKDNPMPKWRSNFMWVTRLSARCILFSFGYQWIRRKGRPAPREVAPIIVSNHVSYIEPIFYFYELFPTIVASDSHDSIPFVGTIIRAMQVIYVNRFSPSSRKQAVREIKRRASCDRFPRVLLFPEGTTTNGRNLISFQLGAFIPGYPIQPIIVRYPHVHFDQSWGHVSLAKLMFRMFTQFHNFFEVEYLPVISPLDDKETAVHFRERASRAIATAMNVVQTGHSYGDIMLYTKAQEAKQENPSSYMVEMAKVELLFHISSLEAVDFLDTFLAMNPDPSGRVQYHDFLRVLRLKACPLSEKIFAFIDVEKSRTITFRQFLFGSAHVLKQRGFRQACEVAFAECGGAVKGYIDEQELRKFIQSAIHRWNEDEVHDLYVLFDSNNDGRINKDDFLSCLRRNPLLIALFTPQPQHKELVGNGVHEIV* 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01361 530 CDD EFh 455 499 IPR002048 GO:0005509
Rops4g01361 530 SMART plsc_2 153 263 IPR002123 GO:0016746
Rops4g01361 530 CDD LPLAT_LPCAT1-like 128 336 IPR045252 GO:0008374
Rops4g01361 530 SUPERFAMILY EF-hand 364 512 IPR011992 -
Rops4g01361 530 SUPERFAMILY Glycerol-3-phosphate (1)-acyltransferase 135 333 - -
Rops4g01361 530 ProSiteProfiles EF-hand calcium-binding domain profile. 473 508 IPR002048 GO:0005509
Rops4g01361 530 ProSitePatterns EF-hand calcium-binding domain. 486 498 IPR018247 -
Rops4g01361 530 Pfam EF-hand domain pair 454 504 IPR002048 GO:0005509
Rops4g01361 530 PANTHER PHOSPHOLIPID ACYLTRANSFERASE 52 355 - -
Rops4g01361 530 Pfam Acyltransferase 150 257 IPR002123 GO:0016746
Rops4g01361 530 Gene3D - 347 509 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01361 Rops-Chr4 35480682 35489205 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g01361 103 338 Acyl Lipid Metabolism Gene Families AT1G80950 29.699 3.17e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01361 K13510 - gmx:100818109 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g01361 4 35480682 35489205 Rops4g01361 4 35480682 35489205 ECH