Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01273 ATGGATCGTCTTTCTAAAGATAAGAGATCCAAACAAGCATGCACCTTCAGAGTAGTAGATCTGTTTCCCTGGTTCTCCAATCCCAAAGTACCCAAGCTTGAAGAAGCCAGTGGCACGCGCACACAACTTCTAAAACCACACAGAGAAACCCAAAAGCTCCCATCTTGCACAAAGCTTCAAACTTTAAGGGGTAAGCTGGTTTCTGTGCAAAGCAAAATGGGAACTTTGGAAGGTTTTGGAGGCCATATTGAATTCAATTCTCATAGTTTGGGAGATGGTGATAGTAATGCACTAATTTTGCCTGCTAAGAAGATGAAGAAAAGGAAAGGGAAGGAACAGGAACATGGAAAGGTCCAATCAAATAAGAAACAGAAGTTGAGCAAACCTCAGAAAAAGAAGCTGAAAAAGTTAGAGGATGACAAGGAGAAGCAACTTCTGCTGGCAAAAGCCTTGAAGACGTTAAATGAAAACACACTTCCAGAGTATGCATATCCTCTCTTGCAGTCTTCATGCAATATCAATCGGGATGAGACTGTGAAGGAAAAGCGTAGGAGGGCTGTACATTTATTAAAAGAAGGATTGGAGGTTCCACATGGTGATGAGCTGTTCATGAATCAGGATGTTCCCTATAGAACTGAACCTGAGACAGAAGAGATTCATTTGCCGCAGGCTCAGGAATTTGAGGAAAATGACATCATTCAACCGATTAGAACAGAAAGAGATGTCTTAAATACAACATCTGTTCCTTTGGAGTCCTCTCAAGAACCAGTTCATAGTGCTGACATTACCATTGACAAGCAACCTGATGAAATCAAAAGTTCTTCTCCCACATCTTGTTCTAATGATGAGATAAAAAGTACCAAGTCAAAGGACAGGACAGAGGAGAACCCTACCACCAATTTGAACGGATTGAGCAATATTCCAGATGTTTCTGCTCAGAGGCCTTCGACTGCTCCTACTGTGGTGCATGTATACAGACCACCTGAGGTTGAGGACAAAAGAAAGGATTTGCCTATAGTCATGATGGAGCAAGAGATAATGGAAGCTATAAACGACCATTCCACTGTTATCATATGTGGAGAAACTGGATGTGGTAAAACAACTCAAGTTCCCCAGTTTCTTTATGAAGCTGGCTATGGTTCAAGTAAGTTCCATTTTCACAATGGGATTATTGGTGTTACTCAACCACGTAGGGTGGCTGTTCTTTCCACAGCAAAGCGTGTGGCATATGAGCTTGGTCTTCATCTCGGGAAGGAGGTTGGCTTCCAAGTGAGATATGACAGAAAAATTGGAGAAAATTGTTCTATCAAGTTTATGACTGATGGCATTTTGCTACGAGAAGTTCAGAGTGATATTTTATTGAAGCGTTATTCTGTGATAATTCTTGATGAGGCTCATGAGAGAAGCTTGAACACAGACATTCTGATCGGGATGCTCTCACGTGTAATTAAAACTCGCCAAAAGATTTATAATGAACAGCAGAAGATTATCCTTTCAGGGGAAAGTATAAGTCCTGAAAAAATGGTTTTTCCATTAAAACTTGTGCTGATGAGTGCCACTTTGCGAGTACAAGACTTTACTTCTGGAAGGTTATTCCATACTCCTCCACCTGTGATTGAAGTTCCTACGAGGCAATTTCCAGTAACAGTGTATTTCTCAAAGAAAACCGAGAAAACAGATTATATTGGAGCAGCATATAAGAAGATCTTGGCAATTCACAAGAAGTTGCCACCTGGGGGCATACTTGTCTTTGTCACTGGACAACGGGAAGTAGAGGACTTGTGCAGGAAGCTACGCAAAGCTTCAAGGGAGTTTATCATGAAGAAAGCTAAAGGGTCTGTGGAAAGTGATGGCACTGTAGTCCACGAAACAAATTCTGTTGAGGGAATAAACATTAATGAGATCAATGAAGCATTTGAGATTCCTGGAAGTTCAACCATCCAGCAAACTGATAGGTTTAGTAGTTATGAAGATGATGAAGATGTAGAGGGGAATGAATCTGATTTTTCGTATAATTCAGAAACAGAGAGTGAACTGGAATTCAATGATGACGATGATAATCGTGAACATTCAGAAAACAAGAGTAATATTGTGGATGTCTTAGGACAGGAAGGAAGTCTTGCTTCACTGAAGGCTGCTTTCAAAAAATTATCTGGGCAAGCCCCATTAAGCTCGTCGAATGTGGAGCAGACATTTTCTGTCAATGCAGAAGAAGATTTAGACCAATCAAAAGATTTCGAGGAGAAAAGAGCTAGAGAAAATTGCAATCTTTCTCCAGGTGCACTCTTTGTTTTACCACTTTATGCCATGCTGCCTGCTGCAGCTCAACTTCGAGTGTTTGAAGGAGCCAAGGAGGGAGAGCGGCTCGTTGTCGTTGCTACAAATGTTGCTGAAACATCTTTAACAATCCCAGGGATAAAGTATGTGGTTGATACTGGAAGGGAAAAGGTGAAGAATTATGACTCCTCTAATGGCATGGAGACATATGAAGTACAATGGATAAGTAAGGCATCTGCCGTTCAACGTGCAGGCAGAGCTGGAAGAACTGAACCTGGACACTGTTATCGTCTTTATTCTTCTGCAGCTTTCAATAATGAGTTTCCTGGGTACTCTCCTGCTGAAGTTGAGAAAGTACCTGTTCATGGTGTTGTCCTCCTCTTGAAATCCATGCATATTAAGAAGGTTGCGAACTTCCCATTTCCTACTTCTCTTAAGGCTGCTTCCCTTCTTGAAGCTGAGAATTGCTTGAAAGCTCTTGAAGCACTTGATAGCAAGGATGAACTTACACTTCTAGGAAAAGCCATGGCACTTTATCCCTTGAGTCCTCGTCATTCTAGAATGATCCTCACTGTTATTCGAAATACAAGACATGAGCGTCATTGTAATCAAAGTCTGCTTTTGGCATATGCTGTTGCAGCTGCTGCAGCATTGAGTTTGTCAAATCCTTTGATAATGCAATATGAAGGAAATGATAGCAGCAGAGATTCAGAGATGTCTGAGAAATCTAGCATGGGAGACAGTGTGAAGGACATTGATAAAAAAGAAAAGTTGAGGAGAAAGAAACTAAAAGAAACTGCTAAGGTTGCACGTGAAAAATTTCGAGTTGCCACTAGTGATGCCTTATCCATAGCTTATGCTTTGCAGTGTTTTGAACATTCACAGAAATCAGTAGAATTCTGTGATGACAACGCATTGCATTTCAAAACTATGGAGGAAATGTCCAAACTTAGACAACAGCTTCTTAAGCTGGTCTTTTATCAAAGTGATAAAGGCAGTTTGGAAGTAGAGTACTCATGGATTTGTGGAACTCTAGAGGATGTTGACCGTGCTTGGCAGGTTTCTTCTGCAAAATATCCTCTTTCTCTGGTTGAGGAAAGGATCATCTGTCAAGCAATATGTGCTGGCTGGGCAGATAGGGTTGCTAAACGTATTATGCCTTCTTCTAGGGTTGCTGATGGAGAAAAAATTTCTCATGCTGTTAGGTATCAATCATGCATGGTTGAAGAAAGTGTTTTCCTTCATCGTTGGTCATCAGTTTCCATTGTGCGCCCTGAGTTTTTGGTTTACAATGAACTATTGGAGACAAAAAGACCAGACAAAGAAGGGGTAACAAGTGCGAAGAGAGCATACATGCATGGAGTAACAAGTGTGGAGCCAGCTTGGCTAGTTGAGCATGCCAAGTCTTCATGCATCTTCTCTCCACCCTTGATGGATCCCAGACCTTTCTACAATGCACAGACTGACCAAGTAAAGAGTTGGGTCATCCCAACCTTTGGGCGTTTCTGTTGGGAGCTTCCAAAGCATGCATTGCCCATTAGCAATGATGAGCTTCGGGTGCAAGTGTTTGCCTATGCATTGCTTGAAGGCCAGGTGTGTCCATGTTTAAAATCTGTTCGAAAATACATGTCAGCTCCTCCTGAAAGTATTATGAAAAGAGAAGCATTTGGTCAAAAAAGGGTGGGAAATCTTTTAAGCAAGTTAAAGAGCAGGCTGATTGATAATTCTGCTATGTTAAGAATGGTGTGGAAGGAGAATCCAAGGGAATTATTTTCAGAAATTCTGGATTGGTTTCAGCAGAGTTTTCACAAGCACTTTGAAGAGTTATGGTTACAAATGCTTAGGGAAGTGCTTCTGGAGACCCAAGAACACCCTCCGAGTAAAAGTTTTAAAAGAAAGTTGAAAGGAAAATCTAAATCGCTGTGA 4203 0.4121 MDRLSKDKRSKQACTFRVVDLFPWFSNPKVPKLEEASGTRTQLLKPHRETQKLPSCTKLQTLRGKLVSVQSKMGTLEGFGGHIEFNSHSLGDGDSNALILPAKKMKKRKGKEQEHGKVQSNKKQKLSKPQKKKLKKLEDDKEKQLLLAKALKTLNENTLPEYAYPLLQSSCNINRDETVKEKRRRAVHLLKEGLEVPHGDELFMNQDVPYRTEPETEEIHLPQAQEFEENDIIQPIRTERDVLNTTSVPLESSQEPVHSADITIDKQPDEIKSSSPTSCSNDEIKSTKSKDRTEENPTTNLNGLSNIPDVSAQRPSTAPTVVHVYRPPEVEDKRKDLPIVMMEQEIMEAINDHSTVIICGETGCGKTTQVPQFLYEAGYGSSKFHFHNGIIGVTQPRRVAVLSTAKRVAYELGLHLGKEVGFQVRYDRKIGENCSIKFMTDGILLREVQSDILLKRYSVIILDEAHERSLNTDILIGMLSRVIKTRQKIYNEQQKIILSGESISPEKMVFPLKLVLMSATLRVQDFTSGRLFHTPPPVIEVPTRQFPVTVYFSKKTEKTDYIGAAYKKILAIHKKLPPGGILVFVTGQREVEDLCRKLRKASREFIMKKAKGSVESDGTVVHETNSVEGININEINEAFEIPGSSTIQQTDRFSSYEDDEDVEGNESDFSYNSETESELEFNDDDDNREHSENKSNIVDVLGQEGSLASLKAAFKKLSGQAPLSSSNVEQTFSVNAEEDLDQSKDFEEKRARENCNLSPGALFVLPLYAMLPAAAQLRVFEGAKEGERLVVVATNVAETSLTIPGIKYVVDTGREKVKNYDSSNGMETYEVQWISKASAVQRAGRAGRTEPGHCYRLYSSAAFNNEFPGYSPAEVEKVPVHGVVLLLKSMHIKKVANFPFPTSLKAASLLEAENCLKALEALDSKDELTLLGKAMALYPLSPRHSRMILTVIRNTRHERHCNQSLLLAYAVAAAAALSLSNPLIMQYEGNDSSRDSEMSEKSSMGDSVKDIDKKEKLRRKKLKETAKVAREKFRVATSDALSIAYALQCFEHSQKSVEFCDDNALHFKTMEEMSKLRQQLLKLVFYQSDKGSLEVEYSWICGTLEDVDRAWQVSSAKYPLSLVEERIICQAICAGWADRVAKRIMPSSRVADGEKISHAVRYQSCMVEESVFLHRWSSVSIVRPEFLVYNELLETKRPDKEGVTSAKRAYMHGVTSVEPAWLVEHAKSSCIFSPPLMDPRPFYNAQTDQVKSWVIPTFGRFCWELPKHALPISNDELRVQVFAYALLEGQVCPCLKSVRKYMSAPPESIMKREAFGQKRVGNLLSKLKSRLIDNSAMLRMVWKENPRELFSEILDWFQQSFHKHFEELWLQMLREVLLETQEHPPSKSFKRKLKGKSKSL* 1401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01273 1400 CDD SF2_C_RHA 751 858 - -
Rops4g01273 1400 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 953 IPR027417 -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 643 691 - -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 993 1009 - -
Rops4g01273 1400 Pfam Helicase associated domain (HA2) 912 1042 IPR007502 GO:0004386
Rops4g01273 1400 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 458 467 IPR002464 -
Rops4g01273 1400 FunFam ATP-dependent RNA helicase DEAH13 545 650 - -
Rops4g01273 1400 SMART ha2_5 911 1044 IPR007502 GO:0004386
Rops4g01273 1400 Gene3D - 286 544 IPR027417 -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 104 138 - -
Rops4g01273 1400 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 347 539 IPR014001 -
Rops4g01273 1400 CDD DEXHc_DHX37 337 541 - -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 296 315 - -
Rops4g01273 1400 FunFam ATP-dependent RNA helicase DEAH13 897 1028 - -
Rops4g01273 1400 SMART ultradead3 335 551 IPR014001 -
Rops4g01273 1400 Pfam Helicase conserved C-terminal domain 750 849 IPR001650 -
Rops4g01273 1400 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 891 IPR001650 -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 248 315 - -
Rops4g01273 1400 SMART helicmild6 745 850 IPR001650 -
Rops4g01273 1400 MobiDBLite consensus disorder prediction 990 1009 - -
Rops4g01273 1400 FunFam ATP-dependent RNA helicase DHX37/DHR1 293 544 - -
Rops4g01273 1400 SMART AAA_5 352 514 IPR003593 GO:0016887
Rops4g01273 1400 Pfam DEAD/DEAH box helicase 344 525 IPR011545 GO:0003676|GO:0005524
Rops4g01273 1400 MobiDBLite consensus disorder prediction 269 283 - -
Rops4g01273 1400 PANTHER ATP-DEPENDENT RNA HELICASE 274 1231 - -
Rops4g01273 1400 Coils Coil 134 154 - -
Rops4g01273 1400 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1128 1227 IPR011709 -
Rops4g01273 1400 Gene3D - 731 869 IPR027417 -
Rops4g01273 1400 Gene3D - 545 635 IPR027417 -
Rops4g01273 1400 Gene3D - 901 1051 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01273 Rops-Chr4 33772363 33782724 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01273 K14780 - gmx:100788201 2021.9