Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01168 ATGGATTATTCAGGTTACAACGTTCATCACCAACAACAGCAACAACAACATTCCTATGAATACGACCCATCTCAGATTCAACCCTACGACCAATCATCCTATCAATACCAACCTTATTACGCTTATAATCACCAATATGGTTACTTTCCAGATACCCATCAACCCCACCTTCATTTCCAACCCGAACCGAATCCGGTTCACCCACCAGGAGTCAACCCAACCGCTCCTGAACCGGTTCAACCCAGACCCAACCATGCACCGACTGCGCCATCTCAATATAGAGGTAGGAGTGGTAGACCATTTAGACGGGGTGGTCATGGTCCAGCTTCATTCCGTGGTAGGGGACGTGGAATCGGGGGTGGTAGACACTTCCCATCTCATTCGTCTGGACCTGCTGCTTCTGATGTACCAGGTGCACCTCCTGCTACTGGAGCCACTTCAGCAGTACAAACTTCATCATCAGTTTCTGGGCAAACAACATTACCTAAACCAGCTCAAGTGCCAGCTGCACCATTGCAAGCACCATCACGCAAGGTATTTTGTGAAATTTGTAAGGTTGAGTGCAATACTCCAGAAATCATGGAGCAGCATAAGAATGGAAAGAGACATAAGAAGAATATGAAAGTACATGAAGAATTACAGAGACGTAATATTATAAATGGGCAACAGAGTGGACAGATTCCTACCTCTCAATTGAATTTAGCAGGTCAACCTGAGAAAGTTCAGAAACCTGAGGAAGAAGAATGCCCCACGGAAAATATGGGCTCTGAAATTACAGCTGATAATCACAAGGATGAAATAAAGCTGCAGAATAATGTAGGACAGACTTCTGAAGTTCCAGCTGAAGAGCCTGAGGGGAAAACCACAGATAACTCTGCTGCAATAGGCCGTGGTTTGAAGCGTAAGATGAGAGGAGGAAAAGTAGGTAAATACATGAAGACTCTTGATGGTTCAAGGCCAGTGCAAGCTGAGCAAGCTATATCTTTTCAATGTGAATTGTGCAATGTTAAATGTGAGTCTCATGTTGTATACCAGAGTCATCTGAGTGGGAAAAAGCACCTATCTAAACTGAAGCGTGCCCATCTTCCCCAAGCTTTGCCTGGAGTAGGTCACCAAGCTTCGTCTGGAGCAGGTCACCAAGCTTCGTCTGGAGCAGGTCACCAAGCTTCATCTGGAGCAGTAGGGCTTCCAGCGGTTTACCCACCTGACATCAATGCTCTGGCGAATGCAATTAATGCTCAAGTCCAACAAGGTGATAATGATCCTCAGTTACTTTTGGCTCAGCTCCTGATGAATGTACTATCTCAAGCACAAGCACCAGCAGTAGCGCCAACAGGCCCCTTGGCTGCTCAGATACCAGCACCCACATCAGTGGCTGGATCAAGTTATGAACCCCAGTTGTCACAGACACAAGTGTCAGAAACCACAGCACATGTTGGGATGGAAAATCCTACTGGGGAAACAAAAAATGAACTGTTACCTGTCCCAGTGGAGTTTAATGCAGTGGCAGGATCATGCGCTACTCAAATTGAAGGTGGAAGTTCTGAAACTAAACAGGTGCAACAACATTCCCAAGATAGTTCAGGTATGACACCCGCAGACAATTCAGGTGCAGCAAATGACCAAATACCTTCATAA 1638 0.4591 MDYSGYNVHHQQQQQQHSYEYDPSQIQPYDQSSYQYQPYYAYNHQYGYFPDTHQPHLHFQPEPNPVHPPGVNPTAPEPVQPRPNHAPTAPSQYRGRSGRPFRRGGHGPASFRGRGRGIGGGRHFPSHSSGPAASDVPGAPPATGATSAVQTSSSVSGQTTLPKPAQVPAAPLQAPSRKVFCEICKVECNTPEIMEQHKNGKRHKKNMKVHEELQRRNIINGQQSGQIPTSQLNLAGQPEKVQKPEEEECPTENMGSEITADNHKDEIKLQNNVGQTSEVPAEEPEGKTTDNSAAIGRGLKRKMRGGKVGKYMKTLDGSRPVQAEQAISFQCELCNVKCESHVVYQSHLSGKKHLSKLKRAHLPQALPGVGHQASSGAGHQASSGAGHQASSGAVGLPAVYPPDINALANAINAQVQQGDNDPQLLLAQLLMNVLSQAQAPAVAPTGPLAAQIPAPTSVAGSSYEPQLSQTQVSETTAHVGMENPTGETKNELLPVPVEFNAVAGSCATQIEGGSSETKQVQQHSQDSSGMTPADNSGAANDQIPS* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01168 545 SUPERFAMILY beta-beta-alpha zinc fingers 328 360 IPR036236 -
Rops4g01168 545 SMART ZnF_U1_5 326 360 IPR003604 GO:0003676|GO:0008270
Rops4g01168 545 SMART ZnF_U1_5 176 210 IPR003604 GO:0003676|GO:0008270
Rops4g01168 545 MobiDBLite consensus disorder prediction 375 389 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 1 29 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 51 173 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 144 163 - -
Rops4g01168 545 Pfam Zinc-finger of C2H2 type 329 353 - -
Rops4g01168 545 Pfam Zinc-finger of C2H2 type 180 203 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 236 257 - -
Rops4g01168 545 PANTHER OS06G0651300 PROTEIN-RELATED 11 399 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 508 545 - -
Rops4g01168 545 Gene3D Classic Zinc Finger 310 360 - -
Rops4g01168 545 Gene3D Classic Zinc Finger 167 212 - -
Rops4g01168 545 SMART c2h2final6 329 353 IPR013087 -
Rops4g01168 545 SMART c2h2final6 179 203 IPR013087 -
Rops4g01168 545 MobiDBLite consensus disorder prediction 61 85 - -
Rops4g01168 545 MobiDBLite consensus disorder prediction 367 394 - -
Rops4g01168 545 SUPERFAMILY beta-beta-alpha zinc fingers 170 211 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01168 Rops-Chr4 31506090 31517398 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01168 - - gmx:100794880 476.863