Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01131 ATGGGTCACTGGTCGAATCGTTGCACACCAGACTCAGATTTTCAACACGTTGCCCTATCTTCTTCTCCCAAAGGCACCATGGAAGGAAGAATGGGGTTTTTATTTTTGATTGTGTTGGGTGCTGCTTGGGCTTCTGATGCAAGAGAGCTAGCAAACCCAGAATTGAACAGAAAATCAGATGTGTGTGCACTTTGTGAGGAATATACTGCTGAAGCACTTGATTATCTGAATGATAACAAGACCCACAGAGAGATCATTGATGCCCTTCACAATACTTGCAATCCGCTTTTCTCTTTTAAGGAACAATGCATCAAACTGGTGGATTATTATGCGCCACTTTTCTTCTCAAAAATCGCTTCAGTTCAGCCTGGAGAACTCTGCAAAAGTCTCTACCTCTGTCAATCTGCTAAGATAACTTCCCAAGTTCAAGAAAATAGATGTACCTTTTGCAAAGATACTGTTTCATCCTTATTGATTAAGTTTAATGATCCTGACACTAAGCTAGAGATATTGGAGACACTATTGAAGGCGTGCAATTCTATGGAGAAGTTAAAGAAGGAGTGCAAGAGGATGGTTTTCGAGTATGGACCTTTGGTCCTTGTTAATGCTGAGAAGTTCCTGAAGACAGCAGATATATGCACTGCATTACATGCCTGCCCTGCTTCCACTGTAGTTAACCAGGAAGCCTCAACCATGGAAGAAATACCCTTGCTTTCTGACTCTTAA 726 0.416 MGHWSNRCTPDSDFQHVALSSSPKGTMEGRMGFLFLIVLGAAWASDARELANPELNRKSDVCALCEEYTAEALDYLNDNKTHREIIDALHNTCNPLFSFKEQCIKLVDYYAPLFFSKIASVQPGELCKSLYLCQSAKITSQVQENRCTFCKDTVSSLLIKFNDPDTKLEILETLLKACNSMEKLKKECKRMVFEYGPLVLVNAEKFLKTADICTALHACPASTVVNQEASTMEEIPLLSDS* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01131 241 SUPERFAMILY Saposin 60 133 IPR011001 -
Rops4g01131 241 SUPERFAMILY Saposin 146 221 IPR011001 -
Rops4g01131 241 FunFam Pulmonary surfactant-associated protein B 143 221 - -
Rops4g01131 241 Gene3D - 57 134 - -
Rops4g01131 241 ProSiteProfiles Saposin B type domain profile. 58 137 IPR008139 -
Rops4g01131 241 Pfam Saposin-like type B, region 1 60 94 IPR007856 GO:0006629
Rops4g01131 241 PANTHER SAPOSIN-RELATED 49 229 - -
Rops4g01131 241 PRINTS Saposin signature 62 82 IPR008373 GO:0005764|GO:0006665
Rops4g01131 241 PRINTS Saposin signature 109 127 IPR008373 GO:0005764|GO:0006665
Rops4g01131 241 PRINTS Saposin signature 175 197 IPR008373 GO:0005764|GO:0006665
Rops4g01131 241 PRINTS Saposin signature 197 220 IPR008373 GO:0005764|GO:0006665
Rops4g01131 241 SMART sapb_4 145 219 IPR008139 -
Rops4g01131 241 SMART sapb_4 60 133 IPR008139 -
Rops4g01131 241 ProSiteProfiles Saposin B type domain profile. 143 223 IPR008139 -
Rops4g01131 241 Pfam Saposin-like type B, region 2 186 219 IPR008138 -
Rops4g01131 241 Pfam Saposin-like type B, region 2 102 133 IPR008138 -
Rops4g01131 241 Gene3D - 142 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01131 Rops-Chr4 30696260 30702079 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01131 K12382 - gmx:100527899 326.25