Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g01128 ATGTTGAGGTGCATCAATGAAAGAATTGGCAGAAGATTTTTATCCACTTATGTCAGTACACGTGGCTGGTGGGACCATGTAAGACCAGAACCGAAGGACCCCATTGTAAGTGTTAATGAGGCCTTTCTTGCTGACCCTTTTCCACACAAGATCAATCTTGGAATGGGTACTTATAGGGATGATGATGGCAAACCATTCACTCCCCAATGCGTTCGTGATGCAGAAGCGAAGATTGAGAGATATAAATTAAGGGAGTCAAACTCTTCTGCAATCAGTTCAAAATTTGTTCAGGAGAGTGTGAAGTTAGCATATGGGAATGATTCACATGTTGTCAGAGAAGGCTTGTTTGCTGGAATTCCAACTCTGTCTGGAACTGGTGCATGTCGGCTTTTTGCTGAATTTCAGAGGCATTTCTATCCTGATTCTCAAATTTATCTACCAGATCCTACCTGGTCAAATCACCACAACATATGGGGACAGGCTGAAATTCCAGTCAGAACCTTCCACTACTACCATCCAGAAACAAAGGGTTTAGATTTTGCTCCACTCATAAATGATATCAAGAATGCACCAGATTGTTCTTTCTTCTTGCTTCATCCATGTGCCCACAACCCAACTGGTGTTGACCCCACTGAGGAACAATGGAGAGAGATATCACACCACCTCAAGGTAAAAAATCATTTTCCCTTCTTTGACATGGCTTATCAAGGTTTTTCAAATGGAGATCTTGACAAGGATGCCGTAGCACTTCGAATTTTCCTTGAAGATGGGCATTTCATAGGTTGTGCTCAATCATTTGCAAAGAATATGGGATTATTTGAGCATAAAGTTGGTTGTCTTAGTGTTTTGTGCCAGAATACAAAGCAAGCAACTGCAGTGAAAAGCCAGCTGCAGCAGATTGCCCATGCAATGTATAGCAGCCTTCCTTCTCATGGTATTTTACTGGTTAATATGATATTAAGCGACCCAAAGACAAAAGCACTTTGGAGGAAAGAGATTAAAGTTATGGCTAAACGGATTCAAACAATGAGAACTACTTTGCGAAGTTGTCTTGAAAACTTGGATTCATCTTTCAATTGGGAGCATATAACTTCCCAGGTTGGCATGTTCTGCTTTTCTGGATTGACCCCTGATCAGGTTGAACACCTGCAGAAGTTGTTCCATATATACATGACACCTGATGGAAGAATAAGCATGGCAGGTGTGACGACAAGAAATGTGAATTATTTGGCAAATGCAATACATCAGGTGACCAGAATCAATGAGGAAGCCTTAAGTGCATGTAATTAA 1290 0.4109 MLRCINERIGRRFLSTYVSTRGWWDHVRPEPKDPIVSVNEAFLADPFPHKINLGMGTYRDDDGKPFTPQCVRDAEAKIERYKLRESNSSAISSKFVQESVKLAYGNDSHVVREGLFAGIPTLSGTGACRLFAEFQRHFYPDSQIYLPDPTWSNHHNIWGQAEIPVRTFHYYHPETKGLDFAPLINDIKNAPDCSFFLLHPCAHNPTGVDPTEEQWREISHHLKVKNHFPFFDMAYQGFSNGDLDKDAVALRIFLEDGHFIGCAQSFAKNMGLFEHKVGCLSVLCQNTKQATAVKSQLQQIAHAMYSSLPSHGILLVNMILSDPKTKALWRKEIKVMAKRIQTMRTTLRSCLENLDSSFNWEHITSQVGMFCFSGLTPDQVEHLQKLFHIYMTPDGRISMAGVTTRNVNYLANAIHQVTRINEEALSACN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g01128 429 CDD AAT_like 51 416 - -
Rops4g01128 429 FunFam Aspartate aminotransferase 315 414 - -
Rops4g01128 429 FunFam Aspartate aminotransferase 82 322 - -
Rops4g01128 429 Gene3D Aspartate Aminotransferase, domain 1 27 414 IPR015422 GO:0003824
Rops4g01128 429 Pfam Aminotransferase class I and II 49 414 IPR004839 GO:0009058|GO:0030170
Rops4g01128 429 PRINTS Aspartate aminotransferase signature 196 215 IPR000796 GO:0006520|GO:0008483
Rops4g01128 429 PRINTS Aspartate aminotransferase signature 295 320 IPR000796 GO:0006520|GO:0008483
Rops4g01128 429 PRINTS Aspartate aminotransferase signature 363 381 IPR000796 GO:0006520|GO:0008483
Rops4g01128 429 PRINTS Aspartate aminotransferase signature 227 239 IPR000796 GO:0006520|GO:0008483
Rops4g01128 429 SUPERFAMILY PLP-dependent transferases 23 419 IPR015424 -
Rops4g01128 429 PANTHER ASPARTATE AMINOTRANSFERASE 20 418 IPR000796 GO:0006520|GO:0008483
Rops4g01128 429 Gene3D - 81 322 IPR015421 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g01128 Rops-Chr4 30628447 30631841 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g01128 K14455 - gmx:100814593 753.436