Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00744 ATGACCCTCGACTCTGTGCTCAGCATGGCCAAGTTTTCCTCCACCGCTTCCAACCAGATTAGGTTCCTGCTTAACTCCTTGAACGAAGTCAACTTTGACTCCGTTTTCCATCAACTCTCTCAGTTCACTGAATTTGGAACCGTTGGATGTGTTTTGCTGCTTCAAACTTGCTTGGATAACTTTAGTCATGTCAGAAGAGATGTGAAAGACATGCAAAACGAGCCAATTCTTGGAGCAGTCATCAAGTACCTCTTGGAAAAACCAAACTTCAGTACAGTGTTTTCTGAGTCAATGAAGAATGTAGAAATTAATGAAAGCTTTCTAGAAAGTTTTTGTAATGGATTGCAGTTGTCTTTATTGGAAAAAATTGCCATCAGTCTCGCCTTATCTGATTCTGAAAATCCCGATGCCAGGCTATGTGGTAAGAATTTCTGCATGGCTCAGATTGAGGAATTGTGTGCCAATCCTGGTTCTCTGAGTTCCCATGAGCAAATTCACAATATTATCATGTTCCTCAAGCAGTCTGAGGGTCTTGCCAAGCATGTGGATTCCTTTATGCAGATATTATCACTGGTGCAGTTCAAGGACACGCCACCTTTTGTTTTGACTCCATTGCTACCAGATGAAATGCATGAGGCTGATTTTTTAAGGAATATGGAGTTGTTCCATGAGTGTGGCGAAAATGAATTTGATGCTATTTTGGCAGACATCCAGAAGGAAATGAATATGGGAGATATCGTGAAGGAACTAGGCTATGGGTGCACGGTTGATGTCTCCCAGTGCAAGGAAATATTGTCGCTCTTCTTACCTTTAACTGATGATACTCTCGCTAAATTACTTGGTGCTATTACTAGTACCCATACTGGGCTGGAGGACAGCCAGAGCACATTCTTAACTTTTCGTGCGGCCCTTGGATACAACAACTTGTCCGAGTTGCCACCACTGAACTCTTGGAATATTGATGTCTTAATAGATACCATCAAGCAACTTGAACCTCAAAACAACTGGGTACGGGTTATTGAAAATCTAGATCATGAAGGATTTTTCCTTCCCAGTGAAGAAGCTTTCTCTTTTCTCATGTCTGTATATAAACATGCCTGTAAGGAACCGTTTCCTCTCCATGCCATCTGTGGGTCTGTTTGGAAGAATACTGAGGGTCAGCTGTCTTTCCTTAAGTATGCTGTATCAGCACCACCAGAAATCTTTACCTTCGCACACTCTGCAAGGCAGCTGGCATATGTTGATGCAATTAACAGCCACAAGCTTCAAACTGGACATGCAAATCATGCATGGCTGTGTCTTGATCTTTTGGATGTCCTCTGCCAGCTAGCTGAGAAGGGTCATGCCAGTATTGTTCGATCAATACTGGAGTATCCCCTCAAACACTGTCCAGAAGTCTTGCTTCTTGGGATGGCACATATTAATACTACTTACAACCTCTTCCAGCATGAAGTATATCTGTTTGTTTTTCCCATGATAGTAAAAAGTGCTGTAGGCAGTGGAATGATTCTACATCTTTGGCATGTTAATCCCAATCTGGTCTTGCGGGGGTTTATGGATTCACAAAACAGTGATTTAGACTGCATTATAAGAATTGTGGACATCTGCCAAGAGCTAAAGATTCTATCATCAGTGCTGGAAATTATTCCCTCTTATTATAGTATAAGGTTAGCAGCTGTTGCTTCAAGAAAAGAATTTATTGACCTTGGGAAGTGGTTGAGTAACAACTTAGCTACGTACAAGGATGTCTTCTTTGAGGAGTGCCTCAAGTTTTTAAAGGAAATCCATTTTGGTGGATCACAGAACCTTTCTGGCAAATCTTTTCATCAGTCTGGTGCTGTTCTGAATCTCTATTCTGAGACAACTGCTACCTTTCTGAAGGTACTTAAATCTCATACTGACCTGGTTACCTCTAGACTACTTCTTGAGGAGCTGGAAAGATTGCATCTATCTATTGTAGATTCAAATCCAAGGCTTCAAAATGGTGGGACTACTGATTTATCTATTCCTGATGAATTTCCAGATGATGTTGAAGCAGAAGCAAACTCCTACTTCCATCAAATGTTTTCTGATCAGTTAACCATTAATGCATTGGTGCAAATGCTTGCCCGATTCAAGGAATCTTCTGTTAAGAGGGAGAAATCAATTTGTGACTGTATGATTGCAAACTTGTTTGAGGAGTGTAAATTTTTTCCAAAGTATCCGGAAAGGCAACTCAAAATTGCTGCAGTTCTATTTGGTTCGGTGATCAAGCATCAGCTTGTAACTCATATCCACCTTGGGTTAGCTCTTCGTTATGTTCTTGATGCACTGCGCAAGCCTACTGATTCAAAAATGTTTTTGTTTGGAAGTCTAGCATTGGAGCAGTTTGTGGATCGTCTTATTGAGTGGCCTCAGTATTGCAATCACATTCTGCAGATTTCCCATTTGCACAGTACACATTCAGAAATAGTTGGTTTCATCGAACAGGCTCTTGCCAGGATTTCCTCTGGTCATACAGATGTAGATGGGGTGAGCCATGCTTCTGTGATTGGTAACCATAATTCTGCGCAGGCTTCATTAGGGCATGTAGAGCAGCTCAGTGGCTCTAGTGTCATACAACCTGGACAGCAACATTTGTCACTGCAGCTTCAACAGAGACGTGAAAATCCCTTGGATGATCGTCACAAAGCCTCTGTTGGTTCATCTACTGATGTAAAACCACTCTTATCTTCTCTAGGGCAATCTTCAGTAGTTACACTTGCTGATACTTCTAATACGAATAAGTTACATAGCACAGTCAGTGCCCCGTCAATGCTATCTTCCTCGCCTGGTTTTGTTCGTCCTTCCCGTGCATCTACTTCTACCAGGTTTGGATCTGCTTTGAACATCGAAACTTTGGTTGCTGCTGCTGAGAAAAGAGAAACTCCTATTGAGGCTCCGGGATCAGAGGTTCAGGACAAGATATCATTTATAATTAATAATATTTCGTCTGCTAATATTGAGGCTAAAGCAAAAGAGTTAACTGAAATTTTGAAGGAGCAGTACTATCCATGGTTTGCACAGTATATGGTTATGAAAAGAGCGAGCATTGAGCCAAATTTCCATGACTTGTACCTGAAATTCCTGGATAAAATCAATTCAAAGGCTTTGAACAAAGAGATTGTCCAGGCTACTTATGAAAATTGCAAGGTCCTTTTAGGATCAGAACTCATAAAGTCAAGTTCAGAAGAGCGCTCTTTGCTTAAAAATCTGGGTAGCTGGCTTGGAAAGTTGACTATTGGCCGAAATCAGGTTTTGAGGGCTCGTGAAATAGACCCAAAATCTTTGATTATGGAGGCATATGAAAAGGGGCTGATGATTGCTGTTATTCCATTTACTTCAAAGGTCCTTGAACCATGCCAAAGCAGTCTTGCATATCAACCCCCTAATCCTTGGACCATGGGCATTTTGGGATTGCTTGCTGAGATTTATTCAATGCCAAACCTGAAAATGAACCTCAAGTTTGACATAGAGGTTTTATTCAAAAATCTTAGCGTAGATATGAAGGACGTCACACCCACTTCTCTCCTGAAGGATCGTAAAAGAGAAATTGAAGGAAATCCTGACTTCTCTAATAAAGATGTGGGGCAATCTCAAGCACAAATGATTTCTGATATAAAATCTGGCCTTGTACCTCCGGTAAATCAAGTGGAATTACCGCTTGAAGTCACCAATCAATCCAATGCTGGGGCTCATCCTCATATGCTGTCTCAGTATGCTGGTCCTCTTCATATTTCCACGGGAGCATTGATGGAAGATGAGAAGGTTACACCTCTGGGCTTGTCTGATCAGCTTCCCTCTGCTCAAGGACTGTTACAAGCCACACCTACCCAATCACCATTTTCTATTAGCCAGCTCCCAACACAGATACCTAATATTGGGACTCATGTTATTATCAATCAAAAGCTCAATGGTTTTGGATTGCAAATGCATTTTCAGAGAGCGGTACCCATCGCGATGGACAGAGCTATCAAGGAGATAGTGTCTAGTATTGTGCAGCGTAGTGTTTCCATCGCAACACAAACAACAAAGGAGCTTGTTTTAAAGGATTATGCTATGGAATCAGATGAAACACGAATATTAAATGCTGCACACTTGATGGTCGCTAGTCTGGCTGGGAGTTTGGCTCATGTTACCTGCAAAGAACCTTTACGGGCATCAATATCAAGTCAACTGAGGAATTCACTTCAGAATTTAAATATTGCAAATGAAATTTTGGAACAAGCTGTGCAGCTTGTTACCAATGATAATCTTGATCTGGGCTGTGCAGTCATTGAACAGGCTGCTACTGATAAGGCAATAAACACCATAGATACAGAGATTGGTCAGCAACTTTCTTTGAGAAGGAAGCATAGAGAAGGTATGGGTTCTACATTTTTTGATGCAAACTTGTATCCGCAAGGTTCTATGGGTGGTGTTCCAGAGCCCCTTCGCCCCAAACCTGGTCAGTTGTCCCTCTCACAACAGCGTGTCTATGAGGACTTTGTTCGGCTTCCATGGCAAAACCAGTCCAGCCAGAGCTCACATTCTATGTCTGCTGGTGTTTCTGTTCAATCTGGAAATACTGGTCTCACTGGCACCAATGGTCCTGTATCAGGACAGATTAACCCTGGTTACTCTGTTAGCACAGGATATGAAGGGGTCTCTCGGCCGATAGATGATATGGCAGAATCTAATTTGGCTCCACATTTTAGTGCTTCATCCGTTCACATTAGAGCAGCTGACACTGTTTCCCAGCATAGTTTGGAGAAAGACTCTGTTGCCTCATTTCCTTCAACTGCTTCCACCCCCGAGTTGCATGCAGTGGATTCTTCAGATGCTGTGAAAGAATCTGGAGCTTCTTCACAGCCACTGGTTTCGGCAGGTGCCGTGGAGCGCCTTGGAAGTAGCTTCTTGGAGCCTACTCTCACTACAAGGGATGCTTTGGATAAATACCAAGCTGTCGCACAAAAGTTGGAAGGTTTGGTTAACAATGATTCCAGGGAAGCAGACATACAGGGCGTCATTTCTGAGGTTCCTGAGATCATACTCAGATGTGTTAGTCGAGATGAGGCTGCTTTAGCTGTGGCTCAAAAGGTTTTCAAGGGTTTGTATGACAATGCAACAAACAACATTCATGTCTGTGCTCATCTTGCAATCCTGACTGCCATTCGTGATGTTTGCAAGCTTGCTGTCAAGGAGCTTACTAGTTGGGTAATTTACTCGGAAGAAGAAAGGAAATATAACAAAGATATTACTGTTGGCCTCATCCGCAGTGAACTGCTAAATCTTACAGAGTACAATGTTCATATGGCAAAACTTATTGATGGGGGAAGGAACAAGGCTGCTACCGAGTTTTCTATCTCTTTTCTTCAAACCCTGGTTATTGAGGAACCTAAAGTTATTTCAGAACTTCACAATCTCGTTGATGCTTTGGCAAAGCTTGCTTCAAAGCCTGGATCCCCTGAATCATTACCACTGCTTGTTGAGATGATCAAGAATCCTGCTGCTCCATCTGCTACTAATGCTGGAAAGGAGGATAAGGCAAGACAATTAAGAGACAATAAGGGTCCTGGTCTGCTTGCTACAAACAGGGAAGAATTGAACAGTGTAGATTCTGTTGAACCAGATCCTGCTGGATTCCGTGAGCAGGTTTCCATGTTGTTTGCAGAATGGTATAGGATATGTGATCTTCCTGGTGCCAACGATACAGCTTCTGCCCACTTCATCTTACAGTTGCATCAGAATGGGTTGCTTAAGGGGGATGATGTAACAGATCGCTTTTTCCGATTGTTGATGGAACTTGCAGTTACACATTGCTTATCCACTGAGGTGATTAATCCAGGGCCACTACAATCTCCCCAACAGGCATCGACAATGTCATTTCTTGCAATTGATATTTTTGCAAAGCTTGTCTTCTATATCTTGAAGGGATCAAGCAAACTGTTTCTTCTATCCAAGATTCTGGCAGTTACTGTCAGATTCATTCTAAAAGATGCAGAGGAAAAGAAGGCCTCTTTTAATCCAAGACCATTTTTCAGATTGTTCATCAACTGGCTTCTAGATCTTGGCTCACTTGAGCCTGTTACTGATGGTTCAAATCTCCAGATTTTGACTGCTTTTGCCAATGCATTTCATGCTCTGCAGCCCCTCAAAGTTCCTGCATTCAGTTTTGCATGGCTTGAGTTGATTAGTCATAGGAGCTTCATGCCAAAAATGCTGACTGGTAATGGCCAAAAAGGTTGGCCTTATATCCAAAGGCTGCTTGTAGATTTGTTCCAATTTATGGAGCCTTTTTTGAGGCATGCCGAACTAGGAGACTCGGTTCGTTCTCTCTATAAAGGCACACTTAGGGTGCTCTTAGTGCTACTTCATGACTTCCCAGAGTTCCTGTGTGACTATCACTTTACCTTCTGTGATGTTATCCCTCCAAGTTGCATACAGATGCGAAATATCATTCTAAGTGCATTTCCGCGTAGTATGAGGCTACCAGATCCTTCCACTCCCAATTTGAAGATTGATTTGCTTCAAGAAATAACTCAATCACCTCGCATTCTTTCGGAGGTTGATGCAGCACTTAAAGCAAAGCAGATGAAGGCTGATATAGATGAATACCTTAAGACAAAGAACCAGGGTTCTCCATTTTTGTCTGAACTGAAGGATAAGCTGCTCCTTCCACCCAATGAAGCTGCCTCGGCTGGGACTCGTTACAATGTGCCTTTAATCAACTCTCTGGTGCTGTATGTTGGAATGCAGGCAATCCAGCAGCTCCAGGGACGAACGCCCCATGCACAATCAGCAGGAAATGGTATCTCATTGGCTATATTTTCTGTTGGTGCTGCATTAGAAATTTTCCAGACACTGATTGTGGACTTAGAAACTGAAGGGCGCTACCTCTTCCTAAATGCTGTTGCTAACCAACTACGCTATCCAAATACTCATACACACTACTTTTCCTTCATCCTTCTTTACTTGTTTGCGGAGTCAACCCAGGACATTATCCAAGAACAAATCACAAGAGTCTTGTTAGAACGCCTCATTGTCAATCGACCTCATCCCTGGGGCCTCCTCATTACTTTTATCGAGCTGATCAAGAATCCTAGGTATAATTTCTGGAACCGGTCTTTCATAAGATGTGCACCAGAAATTGAAAAACTTTTTGAATCAGTCTCAAGATCATGCGGAGGTCCAAAACCAGTGGATGAGAGTATGGTCTCTGGATGGGTCTAA 7230 0.4238 MTLDSVLSMAKFSSTASNQIRFLLNSLNEVNFDSVFHQLSQFTEFGTVGCVLLLQTCLDNFSHVRRDVKDMQNEPILGAVIKYLLEKPNFSTVFSESMKNVEINESFLESFCNGLQLSLLEKIAISLALSDSENPDARLCGKNFCMAQIEELCANPGSLSSHEQIHNIIMFLKQSEGLAKHVDSFMQILSLVQFKDTPPFVLTPLLPDEMHEADFLRNMELFHECGENEFDAILADIQKEMNMGDIVKELGYGCTVDVSQCKEILSLFLPLTDDTLAKLLGAITSTHTGLEDSQSTFLTFRAALGYNNLSELPPLNSWNIDVLIDTIKQLEPQNNWVRVIENLDHEGFFLPSEEAFSFLMSVYKHACKEPFPLHAICGSVWKNTEGQLSFLKYAVSAPPEIFTFAHSARQLAYVDAINSHKLQTGHANHAWLCLDLLDVLCQLAEKGHASIVRSILEYPLKHCPEVLLLGMAHINTTYNLFQHEVYLFVFPMIVKSAVGSGMILHLWHVNPNLVLRGFMDSQNSDLDCIIRIVDICQELKILSSVLEIIPSYYSIRLAAVASRKEFIDLGKWLSNNLATYKDVFFEECLKFLKEIHFGGSQNLSGKSFHQSGAVLNLYSETTATFLKVLKSHTDLVTSRLLLEELERLHLSIVDSNPRLQNGGTTDLSIPDEFPDDVEAEANSYFHQMFSDQLTINALVQMLARFKESSVKREKSICDCMIANLFEECKFFPKYPERQLKIAAVLFGSVIKHQLVTHIHLGLALRYVLDALRKPTDSKMFLFGSLALEQFVDRLIEWPQYCNHILQISHLHSTHSEIVGFIEQALARISSGHTDVDGVSHASVIGNHNSAQASLGHVEQLSGSSVIQPGQQHLSLQLQQRRENPLDDRHKASVGSSTDVKPLLSSLGQSSVVTLADTSNTNKLHSTVSAPSMLSSSPGFVRPSRASTSTRFGSALNIETLVAAAEKRETPIEAPGSEVQDKISFIINNISSANIEAKAKELTEILKEQYYPWFAQYMVMKRASIEPNFHDLYLKFLDKINSKALNKEIVQATYENCKVLLGSELIKSSSEERSLLKNLGSWLGKLTIGRNQVLRAREIDPKSLIMEAYEKGLMIAVIPFTSKVLEPCQSSLAYQPPNPWTMGILGLLAEIYSMPNLKMNLKFDIEVLFKNLSVDMKDVTPTSLLKDRKREIEGNPDFSNKDVGQSQAQMISDIKSGLVPPVNQVELPLEVTNQSNAGAHPHMLSQYAGPLHISTGALMEDEKVTPLGLSDQLPSAQGLLQATPTQSPFSISQLPTQIPNIGTHVIINQKLNGFGLQMHFQRAVPIAMDRAIKEIVSSIVQRSVSIATQTTKELVLKDYAMESDETRILNAAHLMVASLAGSLAHVTCKEPLRASISSQLRNSLQNLNIANEILEQAVQLVTNDNLDLGCAVIEQAATDKAINTIDTEIGQQLSLRRKHREGMGSTFFDANLYPQGSMGGVPEPLRPKPGQLSLSQQRVYEDFVRLPWQNQSSQSSHSMSAGVSVQSGNTGLTGTNGPVSGQINPGYSVSTGYEGVSRPIDDMAESNLAPHFSASSVHIRAADTVSQHSLEKDSVASFPSTASTPELHAVDSSDAVKESGASSQPLVSAGAVERLGSSFLEPTLTTRDALDKYQAVAQKLEGLVNNDSREADIQGVISEVPEIILRCVSRDEAALAVAQKVFKGLYDNATNNIHVCAHLAILTAIRDVCKLAVKELTSWVIYSEEERKYNKDITVGLIRSELLNLTEYNVHMAKLIDGGRNKAATEFSISFLQTLVIEEPKVISELHNLVDALAKLASKPGSPESLPLLVEMIKNPAAPSATNAGKEDKARQLRDNKGPGLLATNREELNSVDSVEPDPAGFREQVSMLFAEWYRICDLPGANDTASAHFILQLHQNGLLKGDDVTDRFFRLLMELAVTHCLSTEVINPGPLQSPQQASTMSFLAIDIFAKLVFYILKGSSKLFLLSKILAVTVRFILKDAEEKKASFNPRPFFRLFINWLLDLGSLEPVTDGSNLQILTAFANAFHALQPLKVPAFSFAWLELISHRSFMPKMLTGNGQKGWPYIQRLLVDLFQFMEPFLRHAELGDSVRSLYKGTLRVLLVLLHDFPEFLCDYHFTFCDVIPPSCIQMRNIILSAFPRSMRLPDPSTPNLKIDLLQEITQSPRILSEVDAALKAKQMKADIDEYLKTKNQGSPFLSELKDKLLLPPNEAASAGTRYNVPLINSLVLYVGMQAIQQLQGRTPHAQSAGNGISLAIFSVGAALEIFQTLIVDLETEGRYLFLNAVANQLRYPNTHTHYFSFILLYLFAESTQDIIQEQITRVLLERLIVNRPHPWGLLITFIELIKNPRYNFWNRSFIRCAPEIEKLFESVSRSCGGPKPVDESMVSGWV* 2410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00744 2409 Gene3D - 666 830 IPR038535 -
Rops4g00744 2409 MobiDBLite consensus disorder prediction 1510 1544 - -
Rops4g00744 2409 FunFam Ccr4-Not transcription complex subunit 944 1192 - -
Rops4g00744 2409 MobiDBLite consensus disorder prediction 1591 1621 - -
Rops4g00744 2409 Pfam CCR4-NOT transcription complex subunit 1 CAF1-binding domain 971 1191 IPR032191 -
Rops4g00744 2409 Gene3D - 2160 2389 - -
Rops4g00744 2409 Pfam CCR4-Not complex, Not1 subunit, domain of unknown function DUF3819 1317 1459 IPR024557 -
Rops4g00744 2409 Gene3D - 1870 2159 - -
Rops4g00744 2409 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX 37 2398 IPR040398 GO:0017148|GO:0030015
Rops4g00744 2409 Coils Coil 1396 1423 - -
Rops4g00744 2409 CDD NOT1_connector 1643 1833 - -
Rops4g00744 2409 MobiDBLite consensus disorder prediction 871 899 - -
Rops4g00744 2409 MobiDBLite consensus disorder prediction 1838 1862 - -
Rops4g00744 2409 FunFam CCR4-NOT transcription complex subunit 1 2160 2389 - -
Rops4g00744 2409 FunFam Transcription regulator 1870 2163 - -
Rops4g00744 2409 FunFam Transcription regulator 663 831 - -
Rops4g00744 2409 Gene3D - 942 1193 - -
Rops4g00744 2409 MobiDBLite consensus disorder prediction 1591 1607 - -
Rops4g00744 2409 Pfam CCR4-NOT transcription complex subunit 1 HEAT repeat 486 630 IPR032194 -
Rops4g00744 2409 Pfam CCR4-Not complex component, Not1 2021 2390 IPR007196 -
Rops4g00744 2409 Pfam CCR4-NOT transcription complex subunit 1 TTP binding domain 660 827 IPR032193 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00744 Rops-Chr4 19746890 19769253 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00744 K12604 - gmx:100783935 4212.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00744 4 19746890 19769253 Rops4g00744 4 19746890 19769253 ECH