Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00740 ATGGGAAAAATCCCACCTGCATTTCGTTCTGCATTCTCAAACCCAAACGTTATTAACCCATCATCTTCATCTTCTGTGATTCCTTCTTCTTCTAAACCCCGTCAATTTCCCAAGAAAATCCAATCCAATTTTCCCGGAAAATCCCGAAAACCCCAGAATGAACCCGACTCTCCAAAACCCACCACTCTATTCAAATCCCCTAGCCTCCAAGACGCGAAAAACGTGTTCAATTCCATTGTTAAAACCTCAAATTCCCCTATTGACCTTCGATTCCACAACACCCTCCTTCAATCCTACGCCTCAGTCTCCACCAACACCAATGATTCCATTGCTTTTCTTCGCCACATGATGAAAATCCATCCTTCACTTTCACCAGATCGATCCACCTACCACATCTTGCTCTCCCAATTTTGCAAAAACCCCAATTCCACACTTTCCCCAATTCACCAAACCCTAAATTTGATGGTCTCCGATGGTATAAAACCCGATAAAGTCACCACCGATGTATCGGTCCGAGCATTATGTTTGGCGGGTCGATTAGACGATGCCGTAGAATTGATCAAAGAATTATCTTTGAAGCATTGCACCCCTGACACTTATACATTCAATTTCCTTGTTAAGCATCTTTGTAAGTGTCAAGCATTAAGCTCTGTTTATAGTTTTATTGATGAAATGCGTGGAAATTTCGGAGTAAAGCCTGATCTTGTTACTTATACCATTTTGATTGATAATGTGTGTAATACTAAGAACTTGCGTGAGGCTTTGAGGTTGGTGAGTGTGCTACATGAGGAGGGTTTTAAGCCGGATTGCTTTGTTTATAATACTATCATGAAAGGGTATTGTATGTTGAATAGAGGGAGTGAGGTAATTGAGGTTTATAATAGAATGAAAGAGGACGGGGTGGAGCCTGATCTTGTTACTTATAACACTTTGATTTATGGGCTATCGAAATCTGGCCGAGTTACAGAAGCTAAGAAGTTGTTGCGTGTTATGACGGAAAAGGGTTATTTTCCTGATGAGGTGACTTATACCACCCTTATGAATGGATTGTGCAGGAAAGGGGATTCCTTGGGTGCATTGGGGTTGTTGGAAGAGATGGAAGCGAAGGGATGTAGTCCTAATTCGTGCACATATAACACGCTGCTACATGGGTTGTGTAAGTCTAGATTGTTGGAGAAGGCTGTTGAATTGTATGGAGTGATTAAATCAGGTGGTTTGAAGCTTGAAACGGCTTCGTATGCTACGTTTATCAGGGCACTGTGCAGGGATGGTAGAGTTGCGGAAGCTTATGAAGTGTTTGACTATGCAGTTGAGAGCAAGAGTTTGACAGATGTTTCTGCTTACTCAACATTGGAAAGCACACTTAAATGGCTCAAGAAAGCAAAAGAACAAGGCCTTGCAATTTAA 1407 0.4172 MGKIPPAFRSAFSNPNVINPSSSSSVIPSSSKPRQFPKKIQSNFPGKSRKPQNEPDSPKPTTLFKSPSLQDAKNVFNSIVKTSNSPIDLRFHNTLLQSYASVSTNTNDSIAFLRHMMKIHPSLSPDRSTYHILLSQFCKNPNSTLSPIHQTLNLMVSDGIKPDKVTTDVSVRALCLAGRLDDAVELIKELSLKHCTPDTYTFNFLVKHLCKCQALSSVYSFIDEMRGNFGVKPDLVTYTILIDNVCNTKNLREALRLVSVLHEEGFKPDCFVYNTIMKGYCMLNRGSEVIEVYNRMKEDGVEPDLVTYNTLIYGLSKSGRVTEAKKLLRVMTEKGYFPDEVTYTTLMNGLCRKGDSLGALGLLEEMEAKGCSPNSCTYNTLLHGLCKSRLLEKAVELYGVIKSGGLKLETASYATFIRALCRDGRVAEAYEVFDYAVESKSLTDVSAYSTLESTLKWLKKAKEQGLAI* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 163 197 IPR002885 -
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 374 408 IPR002885 -
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 303 IPR002885 -
Rops4g00740 468 MobiDBLite consensus disorder prediction 12 67 - -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 341 375 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 171 199 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 272 304 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 236 270 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 306 340 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 376 407 IPR002885 -
Rops4g00740 468 NCBIfam pentatricopeptide repeat 412 440 IPR002885 -
Rops4g00740 468 Pfam PPR repeat 405 435 IPR002885 -
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 409 443 IPR002885 -
Rops4g00740 468 Gene3D Tetratricopeptide repeat domain 60 194 IPR011990 GO:0005515
Rops4g00740 468 Gene3D Tetratricopeptide repeat domain 321 467 IPR011990 GO:0005515
Rops4g00740 468 Gene3D Tetratricopeptide repeat domain 205 317 IPR011990 GO:0005515
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Rops4g00740 468 Pfam PPR repeat 172 191 IPR002885 -
Rops4g00740 468 PANTHER MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 151 455 - -
Rops4g00740 468 MobiDBLite consensus disorder prediction 1 67 - -
Rops4g00740 468 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 339 373 IPR002885 -
Rops4g00740 468 Pfam PPR repeat family 201 247 IPR002885 -
Rops4g00740 468 Pfam PPR repeat family 268 317 IPR002885 -
Rops4g00740 468 Pfam PPR repeat family 338 387 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00740 218 465 Glycosyltransferase AT1G05670 30.709 8.56e-24 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00740 - - cave:132171974 671.774