Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00739 ATGTTCCTTTTACTCAGATACTCCTTCACGTTCTTCTTCACCCTTCTCCTCACATCACCTTCACACATTGTTTCAAAAACTACACTAGATCACACATTGGAGCCACCAGCCACCAAAATAGCCGTCACAAACCACAACATCAAAAGCTTTACCAATGCTGAAAGAGGCACCAAAATCACAGGCATATCACAATTCAAAAGATATCTATCTCGTTTTGGGTATATTCCACAGAAGAACAACACTTTCAATGATGAATTTGATGCCATGTTTGAATTGGCTCTCATTAGATACCAACAAAATCTTGGACTCCAAGTAACTGGGAAGCTCGATTCCAACACGGTTTCTCAAATGATCACACCAAGATGCGGTGTTCAAGACACAACAACAAAAGCTCATCACAATCATCTTCATCATCATCACACCACAAAGCACTATGTGTATTTTCCAGGGAAGCCACGTTGGTCACGTGATATGCCTATGACACTAACCTATGCATTCTCACATGAGTACATGATCAATAGTTTGAGCATGAGTGAGATAAGAGAAACATTCAAACGTGCATTCTCAAGATGGGCTTCAGTTATTCCTGTTAGTTTTGTTGAGGCAGAGGACTATGGTTTTGCTGATTTGAAAATAGGGTTTTACAAAGGTGACCATGGTGATGGTGAACCCTTTGATGGGGTGCTTGGTGTGTTGGCACATTCTTTCTCGCCGGAGATTGGGCGGCTCCACCTTGATGCGGCGGAGACATGGGCGGTGGACTTTGGAGCAACAAAGTCAGAGGTGGCTGTGGATTTGGAATCAGTGGCTACACATGAGATTGGACATTTGTTAGGGTTGTCTCATAGTTCAGTTAAAGAGGCTGTTATGTATCCAAGTTTGAGGCCTAGAGATAAGAGAGCTGATTTAAACATTGATGACATCAAGGGAGTTCAATCTCTATATGGGTCTAACCCTAATTTCAGATCTGAATGGTCCCTTGAGTCTGATATGTCAGCAAATCAAGGTGCTGAGTTTGGAGTGAAACCTTTGAGGGATGATTATGGGGGCTACACGGAGTTGAAAAAGAAGAGAGAAAGAAAAAGAGAGGAGGAAGAAGGAAAAGAAAGAGAGAGAAGAAATAGGTTGAAGGAATGGTTGTTGGTGAAGGTGGCTACTAGTGGCATGGTGACGCTAGACCTGTCGGTGATGGTTGGCGACCGAGACTGGATTGCAAGGCATTGTGGTGGAGAGGTGAAGGAGAAGGAGAGAGAAATGTTAGTGTAA 1266 0.4313 MFLLLRYSFTFFFTLLLTSPSHIVSKTTLDHTLEPPATKIAVTNHNIKSFTNAERGTKITGISQFKRYLSRFGYIPQKNNTFNDEFDAMFELALIRYQQNLGLQVTGKLDSNTVSQMITPRCGVQDTTTKAHHNHLHHHHTTKHYVYFPGKPRWSRDMPMTLTYAFSHEYMINSLSMSEIRETFKRAFSRWASVIPVSFVEAEDYGFADLKIGFYKGDHGDGEPFDGVLGVLAHSFSPEIGRLHLDAAETWAVDFGATKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLRPRDKRADLNIDDIKGVQSLYGSNPNFRSEWSLESDMSANQGAEFGVKPLRDDYGGYTELKKKRERKREEEEGKERERRNRLKEWLLVKVATSGMVTLDLSVMVGDRDWIARHCGGEVKEKEREMLV* 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00739 421 SUPERFAMILY PGBD-like 54 127 IPR036365 -
Rops4g00739 421 Gene3D Collagenase (Catalytic Domain) 51 322 IPR024079 GO:0008237
Rops4g00739 421 SMART col_5 150 317 IPR006026 GO:0006508|GO:0008237|GO:0008270
Rops4g00739 421 PANTHER MATRIX METALLOPROTEINASE 47 329 - -
Rops4g00739 421 Coils Coil 351 374 - -
Rops4g00739 421 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 146 319 - -
Rops4g00739 421 PRINTS Matrixin signature 208 236 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops4g00739 421 PRINTS Matrixin signature 184 199 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops4g00739 421 PRINTS Matrixin signature 303 316 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops4g00739 421 PRINTS Matrixin signature 269 294 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops4g00739 421 PRINTS Matrixin signature 117 130 IPR021190 GO:0004222|GO:0006508|GO:0008270
Rops4g00739 421 CDD ZnMc_MMP 153 316 IPR033739 GO:0008237|GO:0008270
Rops4g00739 421 Pfam Matrixin 154 316 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Rops4g00739 421 Pfam Putative peptidoglycan binding domain 62 117 IPR002477 -
Rops4g00739 421 FunFam Metalloendoproteinase 1 52 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00739 Rops-Chr4 19573582 19583858 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00739 - K07999 gmx:100781237 525.398