Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00574 ATGGGTGGTGGTGAAGAAGAAAATGAAGAAGCGGTGGCTGAAGTTGAAGCGGTGCAAGCCGTTTATGGAACCGATTGTCTCCTTCTCTGTTCTTTTCCTCCTCATTTTCACATCTCCCTGAAACCCAGAACCGCTGATGTTTCCTCTGAACAGTTTGTAGAAGTTGTTCTAGAGGTACGAGCAAGCATGCAGTATCCAAAAGAACCACCTTGTGTTGATCTTGTGGATAGCAAGGGTCTGAATGAACAGAGACAAAAGCATTTGTTAAATTACATACAAAGTAAAGCCAACGAGCTCTCCCCTTGTTTAATGCTTGTAGCTCTCTGTGAGGAAGCAGTAGAGAAACTCTCTGCTATGAATCATCCTGATGGTGATTGTCCATTGTGTTTGTTCCCTTTGGTCCCAGAAGATCACCAAAGTGAAACCTTGCCTTTTATGAAGTTAATGTCTTGCTTTCATTGTTTTCACAGTGAATGTATCATTAGGTGGTGGAACTGGCTTCAAAGTACTAAACAAACAGATGTTGCCAATCCGGATAGTGCAGCTGCACATCCTAACCGAGATAATTATGAAAAAATGGAAAAGAGTGTTGGAAACTGCCCAGTCTGTCGCAAGCCTTTTGATGCCAAGGATTTGGACCATGTGCTTGACCTAGTTGGCTCACATTCTTTCCAATCGAGTTTGGATAATGATGAAGTCAATAATGAGGAAAAGCTCCTTCAATCTGAGCATGAGATCATTAGGAGAGAGAAATTTGAAGCCATCTTAAGTTTACAGAAGGAGAACAGTGGATTGATTGAACCCAAAAAAGATTTAGTAATATTGCCTGGCATGTATCTTCCACAACCAGTTGCAGTTACCAACTCCATGCCAACCAAGGAATCTGATGAGCAGCAAGAAAGAGATCCACCTGCAGTTGTGTCAGAAAAACATGGAAGTGGGACCTCAAATGGGCCTAGTTCTAGTAGGAACAGGAATTTTGGTGCAAGGAGGCAGAAAGCAAGAAGTGATAATCACCACTCTAGCTCAAATGTAAGACATCCAAGAAAACCAGTCCAACAATGGGTTAGAAGAGATAATCCTAGCAATAAGCAATAG 1098 0.4199 MGGGEEENEEAVAEVEAVQAVYGTDCLLLCSFPPHFHISLKPRTADVSSEQFVEVVLEVRASMQYPKEPPCVDLVDSKGLNEQRQKHLLNYIQSKANELSPCLMLVALCEEAVEKLSAMNHPDGDCPLCLFPLVPEDHQSETLPFMKLMSCFHCFHSECIIRWWNWLQSTKQTDVANPDSAAAHPNRDNYEKMEKSVGNCPVCRKPFDAKDLDHVLDLVGSHSFQSSLDNDEVNNEEKLLQSEHEIIRREKFEAILSLQKENSGLIEPKKDLVILPGMYLPQPVAVTNSMPTKESDEQQERDPPAVVSEKHGSGTSNGPSSSRNRNFGARRQKARSDNHHSSSNVRHPRKPVQQWVRRDNPSNKQ* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00574 365 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 122 218 IPR013083 -
Rops4g00574 365 Coils Coil 230 250 - -
Rops4g00574 365 SUPERFAMILY UBC-like 7 116 IPR016135 -
Rops4g00574 365 MobiDBLite consensus disorder prediction 288 365 - -
Rops4g00574 365 Gene3D Ubiquitin Conjugating Enzyme 3 121 IPR016135 -
Rops4g00574 365 SMART ring_2 126 203 IPR001841 -
Rops4g00574 365 Pfam RWD domain 11 115 IPR006575 GO:0005515
Rops4g00574 365 MobiDBLite consensus disorder prediction 310 327 - -
Rops4g00574 365 SMART RWD2001b 13 119 IPR006575 GO:0005515
Rops4g00574 365 FunFam eIF-2-alpha kinase GCN2 3 125 - -
Rops4g00574 365 SUPERFAMILY RING/U-box 118 210 - -
Rops4g00574 365 ProSiteProfiles RWD domain profile. 13 119 IPR006575 GO:0005515
Rops4g00574 365 MobiDBLite consensus disorder prediction 330 344 - -
Rops4g00574 365 FunFam RWD domain-containing protein 122 219 - -
Rops4g00574 365 ProSiteProfiles Zinc finger RING-type profile. 126 204 IPR001841 -
Rops4g00574 365 PANTHER RING FINGER PROTEIN 25 5 354 IPR039133 GO:0061630
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00574 K10640 - gmx:100791789 575.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00574 4 15552094 15558784 Rops4g00574 4 15552094 15558784 ECH