Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00548 ATGGAGACTCTAAAACTGTGGAACCTAACATGGCACCCACTCAAACACTTCTTTTTTCACTCTCACTCTCACGCATTTCGTCGAACACCTCGCAGGTTCGTTCTTCGCTCTTCCTCCACCGCCTCCGCCGCCACCTCCGCTGGTGGTCGGAACCGACGGAGCTCTGCGTCGACGACTTCAACTTCTGATAGGGAGGCCGTTCGAGCAATTCGCTTGAAGAAGGTTGAAGAACTGAGAAGCAAGGGGCTCGATCCATATGCTTATGGATGGGACAAAACTCACAGTGCTAATCAGCTGCAAGATGTATATAGAGATTTAGGAAATGGTGAGGAAGCAAATAGTGAGAATGACCATGTATCTGTTGCGGGCAGAATTGTTGCGAGGAGGGCATTTGGAAAGCTCGCCTTTTTGACACTAAGAGATGATTCAGGGACAATTCAGCTCTATTGTGATAAGGAGAGACTCATAGATGATCAGTTTGAGCAATTGAAGGCGCATGTTGATATTGGTGATATACTAGGTGCAAGAGGAACAATAAAACGCACAGAAAAAGGAGAACTTTCTGTGTGTGCGCTATCTTTTGCAATCCTTACAAAATCTCTGCTTCCACTGCCTGACAAATATCATGGTCTAACTGATATAGATAAACGATATCGCCAGAGGTATGTGGATATGATAGCGAATCCGGAGGTAGGAGATGTATTCCGTAAAAGAGCAAAGGTTGTATCAGAGATACGGAGGACAATGGATTCTTTAGGTTTTGTTGAAGTAGAAACTCCAGTTTTGCAGGGAGCAGCTGGGGGAGCAGAAGCCAGACCATTTATTACATACCATAATTCTCTTGGAAGGGACTTGTATCTGAGAATTGCAACTGAATTGCATCTAAAGAGAATGCTGGTGGGTGGATTTGAAAAAGTATATGAGATTGGTCGAATATTTAGAAATGAAGGAATTTCAACTCGTCATAATCCTGAATTTACAACTATAGAGATGTATGAAGCATACTCGGACTACCAAAGCATGATGAATTTGGCAGAGGAGATTGTCACTCAATGTGCTCTTGCAGTTCATGGGAAGCTTACCATTGATTATCAGGGAGTTGAGATATGTCTGGAAAGGCCCTGGAGGAGGGAGACCATGCACCACCTTGTGAAAGAAGTAGCCGGGATCGATTTCAATGAATTGGGAAATGATCTCGAGGTTGCAAAGCAAGCTACTCTGGATACCCTTGGAAATCTTGATAACAAGGATAAAGCTTCCGTTGAAGCATGCCAATCTGTTGGCCATCTCCTTAACGAGGTTTTTGAGCTCTTTGTAGAACCAAAGCTCATCCAACCTACATTTGTTTTAGACTATCCAATTGAAATATCCCCACTGGCTAAACCACACCGAAGATCCACAGGTTTGACTGAGAGATTTGAGCTTTTCATTTGTGGTCGTGAGCTAGGCAATGCATTCTCTGAATTGACTGATCCTATAGATCAGAGAGGACGCCTAGAGGATCAAATTAGACAGCATGAAAAGAAGAGAGCAGCTGTTTCAACAAATGGTGATAAGAAGGAAGGAATGGAAAATGAGGATGACTCATATGAAGTGACTCTTGATGATGACTTCCTAACAGCTTTGGAATATGGAATGCCTCCAGCTTCTGGAATGGGACTTGGAATTGATAGGCTTGTGATGCTTTTGACAAATTCTCCCAGCATTCGAGATGTAATTGCCTTCCCAGTACTCAAGGTCCAGCAATAG 1749 0.4351 METLKLWNLTWHPLKHFFFHSHSHAFRRTPRRFVLRSSSTASAATSAGGRNRRSSASTTSTSDREAVRAIRLKKVEELRSKGLDPYAYGWDKTHSANQLQDVYRDLGNGEEANSENDHVSVAGRIVARRAFGKLAFLTLRDDSGTIQLYCDKERLIDDQFEQLKAHVDIGDILGARGTIKRTEKGELSVCALSFAILTKSLLPLPDKYHGLTDIDKRYRQRYVDMIANPEVGDVFRKRAKVVSEIRRTMDSLGFVEVETPVLQGAAGGAEARPFITYHNSLGRDLYLRIATELHLKRMLVGGFEKVYEIGRIFRNEGISTRHNPEFTTIEMYEAYSDYQSMMNLAEEIVTQCALAVHGKLTIDYQGVEICLERPWRRETMHHLVKEVAGIDFNELGNDLEVAKQATLDTLGNLDNKDKASVEACQSVGHLLNEVFELFVEPKLIQPTFVLDYPIEISPLAKPHRRSTGLTERFELFICGRELGNAFSELTDPIDQRGRLEDQIRQHEKKRAAVSTNGDKKEGMENEDDSYEVTLDDDFLTALEYGMPPASGMGLGIDRLVMLLTNSPSIRDVIAFPVLKVQQ* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00548 582 Pfam OB-fold nucleic acid binding domain 119 192 IPR004365 GO:0003676
Rops4g00548 582 NCBIfam lysine--tRNA ligase 69 580 IPR002313 GO:0004824|GO:0005524|GO:0006430
Rops4g00548 582 SUPERFAMILY Nucleic acid-binding proteins 65 206 IPR012340 -
Rops4g00548 582 Pfam tRNA synthetases class II (D, K and N) 215 578 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops4g00548 582 SUPERFAMILY Class II aaRS and biotin synthetases 213 578 IPR045864 -
Rops4g00548 582 Gene3D Bira Bifunctional Protein; Domain 2 209 582 IPR045864 -
Rops4g00548 582 MobiDBLite consensus disorder prediction 506 529 - -
Rops4g00548 582 CDD LysRS_N 118 225 IPR044136 GO:0000166
Rops4g00548 582 Hamap Lysine--tRNA ligase [lysS]. 70 581 IPR002313 GO:0004824|GO:0005524|GO:0006430
Rops4g00548 582 FunFam Lysine--tRNA ligase 209 582 - -
Rops4g00548 582 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 235 576 IPR006195 -
Rops4g00548 582 MobiDBLite consensus disorder prediction 506 527 - -
Rops4g00548 582 PANTHER LYSYL-TRNA SYNTHETASE 46 581 - -
Rops4g00548 582 FunFam Lysine--tRNA ligase 64 206 - -
Rops4g00548 582 Coils Coil 496 516 - -
Rops4g00548 582 Gene3D - 57 208 IPR012340 -
Rops4g00548 582 PRINTS Lysyl-tRNA synthetase signature 250 260 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Rops4g00548 582 PRINTS Lysyl-tRNA synthetase signature 445 461 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Rops4g00548 582 PRINTS Lysyl-tRNA synthetase signature 313 330 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Rops4g00548 582 PRINTS Lysyl-tRNA synthetase signature 295 308 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Rops4g00548 582 PRINTS Lysyl-tRNA synthetase signature 266 282 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
Rops4g00548 582 MobiDBLite consensus disorder prediction 41 65 - -
Rops4g00548 582 CDD LysRS_core 228 579 IPR018149 GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00548 Rops-Chr4 15027695 15047094 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00548 K04567 - gmx:100787720 1025.77