Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00547 ATGGAGGCATCAGAAGACACTAAGAAGGAAGAGGAAGAGCAGGTGGTGAATCCATGGGAGGTTTCAGCCAAAGACGGAGGCAAAATCGATTACGACAAGCTCATCGATCGTTTCGGTTGCCAAAGACTCGACCAATCCCTAATTCAACGCCTCGAACGACTCACTTCTCGCCCCGCTCATGTCTTCCTCCGTCGCGGCGTTTTCTTCGCTCACCGTGATTTTGCTGAGATTTTGGATGCTTATGAAAGGGGTGATAAGTTTTACTTGTATACTGGACGGGGACCCTCCTCTGAAGCTTTGCATTTGGGACATTTGATTCCCTTCATGTTCACCAAGTATTTGCAAGATGCCTTCAAGGTTCCTCTGGTTATACAGCTCACTGATGATGAGAAGTTCTTGTGGAAAAATCTTACTATAGAGGAGTGCCAAAGACTAGCAAGGGAGAATGCAAAGGACATCATTGCTTGTGGTTTTGACATTTCAAAGACATTCATCTTCTCTGATTTCAATTATGTTGGCGGTGCCTTCTACAAGAACATGGTAGAGGTTGCAAAGCGTGTGACATATAACCAGGCTGTTGGCATTTTTGGTTTCACTGGGGAAGATCATATTGGAAAAGTTAGTTTTCCACCTGTGCAGGCTGTTCCATCATTTCCTAGTTCATTTCCTCACCTGTTTTCTGGCAAAGAGAATCTCCGATGTTTAATTCCTTGTGCAATTGACCAGGATCCTTATTTTAGAATGACACGAGATGTTGCTCCTCGAATAGGATGCCACAAGCCGGCCTTGATTGAATCATTATTCTTCCCTGCATTACAGGGGGAAACAGGAAAAATGTCTGCCAGTGATCCCAATTCTGCAATATATGTGACTGATTCTGCAAAAGATATAAAGAATAAGGTAAACAGGCATGCATTCTCCGGTGGGCAAGATTCTATAGAGAAACATAGGCAATTAGGGGCAAATCTAGAGGTAGATATACCAGTCAAATACCTCTCTTTTTTCCTAGAAGATGATGCTGAACTTGAACACATCAAGAAGGAGTATGGAGCAGGACGGATGCTAACCGGTGAGGTGAAGCAGCGCCTAACTCAAGTTTTGACTGAACTAGTGGAAAGACATCGTAGGGCTCGGGCTGCGGTGACTGATGAGATGGTGGATGCATTTATGGCTGTCAGACCACTTCCCCACATGTTTGATTGA 1203 0.4439 MEASEDTKKEEEEQVVNPWEVSAKDGGKIDYDKLIDRFGCQRLDQSLIQRLERLTSRPAHVFLRRGVFFAHRDFAEILDAYERGDKFYLYTGRGPSSEALHLGHLIPFMFTKYLQDAFKVPLVIQLTDDEKFLWKNLTIEECQRLARENAKDIIACGFDISKTFIFSDFNYVGGAFYKNMVEVAKRVTYNQAVGIFGFTGEDHIGKVSFPPVQAVPSFPSSFPHLFSGKENLRCLIPCAIDQDPYFRMTRDVAPRIGCHKPALIESLFFPALQGETGKMSASDPNSAIYVTDSAKDIKNKVNRHAFSGGQDSIEKHRQLGANLEVDIPVKYLSFFLEDDAELEHIKKEYGAGRMLTGEVKQRLTQVLTELVERHRRARAAVTDEMVDAFMAVRPLPHMFD* 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00547 400 PANTHER TRYPTOPHANYL-TRNA SYNTHETASE 5 396 - -
Rops4g00547 400 FunFam Tryptophan--tRNA ligase, cytoplasmic 283 400 - -
Rops4g00547 400 SUPERFAMILY Nucleotidylyl transferase 13 393 - -
Rops4g00547 400 Gene3D HUPs 6 281 IPR014729 -
Rops4g00547 400 NCBIfam tryptophan--tRNA ligase 86 391 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops4g00547 400 FunFam tryptophan--tRNA ligase, cytoplasmic 9 282 - -
Rops4g00547 400 CDD TrpRS_core 88 370 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops4g00547 400 Pfam tRNA synthetases class I (W and Y) 240 370 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops4g00547 400 Gene3D - 282 399 - -
Rops4g00547 400 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 95 105 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops4g00547 400 PRINTS Tryptophanyl-tRNA synthetase signature 100 116 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops4g00547 400 PRINTS Tryptophanyl-tRNA synthetase signature 152 171 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops4g00547 400 PRINTS Tryptophanyl-tRNA synthetase signature 278 288 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Rops4g00547 400 PRINTS Tryptophanyl-tRNA synthetase signature 234 255 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00547 K01867 - gmx:100787194 731.865