Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00455 ATGACGACCATGGAGAGCTTGATCGGTTTGGTAAACCGAATCCAGCAAGCTTGCACCAATCTTGGTGACTATGGCGGTTCCGATAACAACACCTTCTCTTCTCTCTGGGAAGCTCTTCCTTCTGTCGCCGTCGTCGGTGGCCAGAGTTCGGGTAAGTCTTCGGTTTTGGAGAGCATCGTTGGACGTGACTTTCTGCCTAGAGGATCAGGGATTGTGACGAGGCGTCCATTAGTGTTGCAGCTTCATATGATAGAAGGTGATGCAGAGGAGTATGCTGAGTTTCTTCACATGCCAAGGAGAAAGATAACTGATTTTGCCCTAGTCCGCCAGGAAATTCAGGATGAAACTGATAGATTAACGGGAAAGACAAGACAAATATCTCCTGTTCCAATTCATCTTAGCATTTATTCTCCACATGTTGTCAACCTAACTTTGATTGATTTACCGGGGTTGACTAAAGTTGCTGTAGATGGACAGCCAGAGTCTGTTGTTCAAGACATTGAAAATATGGTTCGATCTTACGTTGAGAAGCCTAATTGTATCATACTGGCAATATCTCCGGCCAACCAAGATATAGCAACTTCTGATGCTATCAAACTTTCCAGGGAAGTGGATCCCTCAGGTGAAAGGACATTCGGAGTTTTGACAAAGCTGGATTTGATGGACAAAGGAACTAATGCATTGGATGTCCTTGAAGGAAGATCTTATCGCCTGCAACATCCTTGGGTTGGTATAGTAAATCGATCCCAAGCAGATATAAATAAAAATGTTGATATGATTGTTGCCAGACGCAAGGAGCGTGAGTATTTTGCAACCAGTCCTGACTATGGGCACTTAGCCAATAAAATGGGTTCCGAATACCTAGCAAAGCTTCTCTCACAGCACTTGGAGTCAGTAATTAAGGCACGGATACCTAGTATAACATCTTTGATAAACAAAAACATTGAAGAACTTGAATCAGAGATGGATCATCTTGGGAGACCAATTGCTGTTGATGCTGGGGCTCAACTATACACCATCCTAGAAGTTTGCCGCATATTTGAACGGATATTCAAGGAGCATTTGGATGGAGGGCGACCAGGAGGAGACAGGATATATAATGTCTTCGACAATCAGCTTCCAGCAGCTTTACGGAAGCTTCCGATTGACCGACATCTTTCTCTTCAGAATGTGAAGAGAGTGGTGTCAGAGGCAGATGGTTACCAGCCTCACTTAATTGCCCCAGAGCAAGGTTACCGGCGCCTGATTGAGGGGGCTCTTGGTTACTTTAGAGGCCCAGCTGAAGCTTCAGTTGATGCAGTTCACTTTGTCTTAAAAGAACTTGTGAGGAAATCAATAGCTGAAACTCAGGAACTGAAACGTTTCCCAACTCTTCAAGCCGAACTAGCTGCAGCTACAACTGAGGCTTTAGAGAGGTTCCGTGAAGGGAGTAAGAAGACAACCGTTCGGCTTGTGGATATGGAATCTTCGTATCTCACTGTGGAGTTTTTCCGGAAACTTCCTCAAGAAATGGAGAAAGCTGGAAATCCAGCTAATCAAGCTAATCCAGCTGCCTCAAATGTGGATCGATATGGAGAGGGACATTTTAGGAGGATTGGATCAAATGTTTCATCCTATATTGGTATGGTGTCAGACACACTCAGGAACACGATTCCAAAGGCTGTGGTTTATTGTCAGGTCAGAGAAGCAAAACTGTCATTGCTAAACCATTTCTACACACAAATAGGGAAGAAAGAGACTAAACAGCTATCCCAGTTGTTAGACGAAGACCCTGCCGTGATGGAGAGGAGACAACAATGTTTTAAAAGGCTTGAACTATATAAAGCAGCAAGGGATGAAATTGACTCTGTTTCTTGGGCACGATGA 1866 0.4416 MTTMESLIGLVNRIQQACTNLGDYGGSDNNTFSSLWEALPSVAVVGGQSSGKSSVLESIVGRDFLPRGSGIVTRRPLVLQLHMIEGDAEEYAEFLHMPRRKITDFALVRQEIQDETDRLTGKTRQISPVPIHLSIYSPHVVNLTLIDLPGLTKVAVDGQPESVVQDIENMVRSYVEKPNCIILAISPANQDIATSDAIKLSREVDPSGERTFGVLTKLDLMDKGTNALDVLEGRSYRLQHPWVGIVNRSQADINKNVDMIVARRKEREYFATSPDYGHLANKMGSEYLAKLLSQHLESVIKARIPSITSLINKNIEELESEMDHLGRPIAVDAGAQLYTILEVCRIFERIFKEHLDGGRPGGDRIYNVFDNQLPAALRKLPIDRHLSLQNVKRVVSEADGYQPHLIAPEQGYRRLIEGALGYFRGPAEASVDAVHFVLKELVRKSIAETQELKRFPTLQAELAAATTEALERFREGSKKTTVRLVDMESSYLTVEFFRKLPQEMEKAGNPANQANPAASNVDRYGEGHFRRIGSNVSSYIGMVSDTLRNTIPKAVVYCQVREAKLSLLNHFYTQIGKKETKQLSQLLDEDPAVMERRQQCFKRLELYKAARDEIDSVSWAR* 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00455 621 Gene3D - 4 314 IPR027417 -
Rops4g00455 621 SMART dynamin_3 4 256 IPR001401 GO:0003924|GO:0005525
Rops4g00455 621 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 313 IPR027417 -
Rops4g00455 621 Pfam Dynamin central region 226 493 IPR000375 -
Rops4g00455 621 Pfam Dynamin GTPase effector domain 526 617 IPR003130 GO:0003924|GO:0005525
Rops4g00455 621 SMART GED_2 524 617 IPR003130 GO:0003924|GO:0005525
Rops4g00455 621 Gene3D Dynamin, middle domain 330 587 - -
Rops4g00455 621 PRINTS Dynamin signature 64 81 IPR022812 -
Rops4g00455 621 PRINTS Dynamin signature 137 154 IPR022812 -
Rops4g00455 621 PRINTS Dynamin signature 187 205 IPR022812 -
Rops4g00455 621 PRINTS Dynamin signature 229 248 IPR022812 -
Rops4g00455 621 PRINTS Dynamin signature 206 222 IPR022812 -
Rops4g00455 621 PRINTS Dynamin signature 39 57 IPR022812 -
Rops4g00455 621 FunFam Dynamin-related protein 1C 336 597 - -
Rops4g00455 621 CDD DLP_1 39 305 IPR001401 GO:0003924|GO:0005525
Rops4g00455 621 ProSitePatterns Dynamin-type guanine nucleotide-binding (G) domain signature. 65 74 IPR019762 -
Rops4g00455 621 ProSiteProfiles GED domain profile. 529 621 IPR020850 -
Rops4g00455 621 PANTHER DYNAMIN 5 617 IPR022812 -
Rops4g00455 621 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 36 305 IPR030381 GO:0005525
Rops4g00455 621 Pfam Dynamin family 42 217 IPR045063 -
Rops4g00455 621 FunFam dynamin-related protein 1E 4 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00455 Rops-Chr4 13390928 13399019 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00455 - - gmx:100790977 1085.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops4g00455 4 13390928 13399019 Rops4g00455 4 13390928 13399019 ECH