Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00423 ATGTCCACTCTTCTTCACTCTCTTTCCACTTCTTCTTCTTCCTCTCACATCACTCCTCGTTCCTTCCCTCCAATCGATCCTTCACCTCGCATCTTTCTTCGAAACGGCGTCAGATGTAAGGTAATAGATGGGGTGAGGTTGGAGAATAATGGAAGGCCAAATCCGAGTGAGTCAGTAGTTAGCGGCGGTGGAAACGCGATTCCGAGTTTCTTAGTGGCGCCAAAAGCACGTATCCAGGATTTGGTTAACAGAAATGACACTCGTCTTAGGATATTTTCCGGCACTGCCAATCCGGCTCTTGCTCAGGAAATTGCATGCTACATGGGCCTTGAGCTTGGAAAAATTAAGATAAAACGTTTTGCCGATGGTGAGATATATGTTCAGCTGCAAGAGAGTGTCAGGGGGTGTGATGTGTTTCTTGTGCAGCCCACGTGTCCTCCTGCCAATGAAAATCTTATGGAGCTTCTCATAATGATTGATGCCTGCCGGAGAGCTTCAGCCAAAAATATTACTGCAGTCATTCCATATTTTGGATATGCTAGAGCTGATAGAAAGACTCAAGGGCGTGAATCCATTGCTGCAAAGCTTGTAGCAAATTTAATTACAGAAGCAGGTGCAAATCGCGTTCTTGCTTGTGACCTCCATTCTGGGCAGTCCATGGGCTATTTTGATATTCCAGTTGATCATGTGTATGGACAGCCTGTTATACTTGATTACCTTGCCAGCAAGACTATTTGTTCAGATGATTTGGTAGTTGTCTCACCAGATGTTGGAGGTGTTGCTAGAGCACGTGCTTTTGCCAAAAAATTGTCTGATGCTCCTTTAGCTATTGTTGATAAAAGGCGTCACGTGCATAATGTTGCTGAGGTGATGAATTTGATAGGTGATGTAAAGGGAAAGGTAGCAGTTATGGTAGATGACATGATTGATACTGCTGGGACTATAGCCAAAGGTGCAGCTCTGTTGCATCAAGAAGGGGCAAGAGAAGTCTATGCATGCACCACACATGCTGTTTTCAGTCCTCCTGCTATAGAGAGGTTGTCAAGCGGTTTGTTTCAAGAAGTCATCACAACCAATACAATTCCAGTGGCAGAACAGAACTATTTCCCCCAACTAACTGTCCTATCAGTGGCAAACCTTCTGGGCGAGACTATATGGCGTGTTCATGATGATTGCTCAGGTGGAATTGAACCTTATTCCAGTTTGGGCATTGATTGA 1218 0.4466 MSTLLHSLSTSSSSSHITPRSFPPIDPSPRIFLRNGVRCKVIDGVRLENNGRPNPSESVVSGGGNAIPSFLVAPKARIQDLVNRNDTRLRIFSGTANPALAQEIACYMGLELGKIKIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTQGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKTICSDDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRHVHNVAEVMNLIGDVKGKVAVMVDDMIDTAGTIAKGAALLHQEGAREVYACTTHAVFSPPAIERLSSGLFQEVITTNTIPVAEQNYFPQLTVLSVANLLGETIWRVHDDCSGGIEPYSSLGID* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00423 405 Gene3D - 232 375 IPR029057 -
Rops4g00423 405 Pfam Phosphoribosyl synthetase-associated domain 289 393 IPR005946 GO:0000287|GO:0004749|GO:0009165
Rops4g00423 405 Pfam N-terminal domain of ribose phosphate pyrophosphokinase 89 205 IPR029099 -
Rops4g00423 405 Hamap Putative ribose-phosphate pyrophosphokinase [prs]. 89 399 IPR037515 GO:0004749
Rops4g00423 405 FunFam Ribose-phosphate pyrophosphokinase 92 244 - -
Rops4g00423 405 MobiDBLite consensus disorder prediction 1 22 - -
Rops4g00423 405 Gene3D - 92 390 IPR029057 -
Rops4g00423 405 MobiDBLite consensus disorder prediction 1 21 - -
Rops4g00423 405 SUPERFAMILY PRTase-like 154 390 IPR029057 -
Rops4g00423 405 ProSitePatterns Phosphoribosyl pyrophosphate synthase signature. 213 228 IPR000842 GO:0000287|GO:0004749|GO:0009156|GO:0044249
Rops4g00423 405 NCBIfam ribose-phosphate diphosphokinase 90 392 IPR005946 GO:0000287|GO:0004749|GO:0009165
Rops4g00423 405 PANTHER RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER 88 393 IPR005946 GO:0000287|GO:0004749|GO:0009165
Rops4g00423 405 SMART Pribosyltran_N_2 89 205 - -
Rops4g00423 405 CDD PRTases_typeI 248 360 IPR000836 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00423 Rops-Chr4 12561084 12570139 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00423 K00948 - gmx:100816430 702.59