Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00407 ATGGCGATGTTGTGTGGTGGAACTCCATGGACAAAGGTTATTGCTTCTCCCATTCTTCATCAATCCTTCTTCTTTCGAAGGAAATTCTCAGTAACTGCTCTTTCCTCACAATCACCACTTCCCATTCGTGTTCGTTTTGCTCCTTCTCCCACTGGTAACCTTCATGTTGGTGGTGCCAGAACAGCCCTTTTCAACTACTTGTTTGCTAGGTCCAAAGGTGGGAAATTTGTGTTGAGGATTGAGGACACTGACTTGGAGAGGTCTACTAAGGAATCTGAGGAGACCTTGCTTCGAGATCTTTCTTGGCTTGGACTTGATTGGGATGAAGGGCCTGGTGTTGGTGGGGATTATGGTCCATATAGGCAATCTGAGAGGAATTCTTTGTACAAACAATATGCTGAGAAACTACTCCAATCCGGTCAAGTTTATCGTTGCTTCTGTTCTAATGAGGAACTAGAGAAAATGAAGGAGGTTGCTAAACTAAAGAACCTGCCTCCAGTATACACAGGTAAATGGGCCAGTGCAACAAATGAAGAAGTAGAAGAAGAGCTGGCAAATGGAACTCCTTACACATTCCGGTTTCGTGTTCCCGAAGGAAGTTTGAAAATTAATGACCTAATACGAGGCGAAGTTAGTTGGAACTTGGATACGCTTGGAGATTTTGTGATAATGAGGAGTAATGGTCAGCCTGTTTATAACTTTTGTGTGACGGTGGATGATGCAACCATGGCTATTTCCCATGTTATCAGAGCAGAGGAGCATTTACCAAACACTCTAAGGCAGGCATTGATATATAAGGCACTAGAATTTCCCATGCCTTACTTTGCACACGTTTCCTTGATTTTAGCTCCTGATCGGAGTAAATTATCAAAACGACATGGAGCAACATCAGTGGGTCAGTTCAGGGAGATGGGATACCTACCTGAAGCAATGGTGAATTACCTAGCATTATTAGGATGGGGTGACGGGACTGAAAATGAGTTTTTCACCCTTGATCAACTTGTTGAAAAATTCACTATTGAACGTGTTAACAAAAGTGGTGCTGTTTTTGATTCTGCAAAGTTAAGATGGATGAATGGTCAGCATTTAAGAGCACGTCCATCAGAGGAGTTGACCAATCTTATTGGAGAGCACTGGAAGACATCTGGCTTGCTCACAATATCAACTGGACCCGTTATTGATGAAGCCATTCAGCTACTTAAGGATGGGATTGACTTGATTACTGATGCAGACAAGGCACTTGCTAACTTGCTTTCTTATCCTCTAAATTCTACTTTACAAAGCCATGAAGCAGAACCTGTCGTACAAGATAATCTTTCTGAATTTTCTGCCAGTCTCTTGGCTGCCTATGATAGTGGTGATCTGGTAGCTGCACTTGAAGAAGGACAAGCTGGTTGGCAAAAGTGGGTCAAAGGTTTTGGTAAATCACTTAAGCGCAAGGGAAAATCGCTTTTCATGCCCCTCAGACTTTTACTGACTGGAAAACTTCATGGACCTGATATGGGGGCTAGCATTGTATTGCTCTTTAAAGCTGGGAATACTGGTATTGTAGCTCCTGAAGTTGGCTTTGTGACAATTGATGAAAGATTTAAAATGCTTAGGCAAATTAACTGGGAAACATTGTCCAAGGATCATCCTGTCAAGGAGCCTGCTACTTCAGTATAA 1665 0.4246 MAMLCGGTPWTKVIASPILHQSFFFRRKFSVTALSSQSPLPIRVRFAPSPTGNLHVGGARTALFNYLFARSKGGKFVLRIEDTDLERSTKESEETLLRDLSWLGLDWDEGPGVGGDYGPYRQSERNSLYKQYAEKLLQSGQVYRCFCSNEELEKMKEVAKLKNLPPVYTGKWASATNEEVEEELANGTPYTFRFRVPEGSLKINDLIRGEVSWNLDTLGDFVIMRSNGQPVYNFCVTVDDATMAISHVIRAEEHLPNTLRQALIYKALEFPMPYFAHVSLILAPDRSKLSKRHGATSVGQFREMGYLPEAMVNYLALLGWGDGTENEFFTLDQLVEKFTIERVNKSGAVFDSAKLRWMNGQHLRARPSEELTNLIGEHWKTSGLLTISTGPVIDEAIQLLKDGIDLITDADKALANLLSYPLNSTLQSHEAEPVVQDNLSEFSASLLAAYDSGDLVAALEEGQAGWQKWVKGFGKSLKRKGKSLFMPLRLLLTGKLHGPDMGASIVLLFKAGNTGIVAPEVGFVTIDERFKMLRQINWETLSKDHPVKEPATSV* 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00407 554 CDD GluRS_core 42 364 IPR033910 GO:0006424|GO:0008270
Rops4g00407 554 NCBIfam glutamate--tRNA ligase 42 510 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Rops4g00407 554 SUPERFAMILY Nucleotidylyl transferase 42 350 - -
Rops4g00407 554 FunFam Glutamate--tRNA ligase chloroplastic/mitochondrial 424 517 - -
Rops4g00407 554 Gene3D - 424 515 IPR020751 -
Rops4g00407 554 Pfam tRNA synthetases class I (E and Q), catalytic domain 42 357 IPR020058 GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 48 59 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Rops4g00407 554 Hamap Glutamate--tRNA ligase [gltX]. 41 537 IPR004527 GO:0000166|GO:0004818|GO:0005524|GO:0006424
Rops4g00407 554 PANTHER GLUTAMATE--TRNA LIGASE 34 533 - -
Rops4g00407 554 Pfam Anticodon binding domain 391 508 IPR045462 -
Rops4g00407 554 PRINTS Glutamyl-tRNA synthetase signature 59 70 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 PRINTS Glutamyl-tRNA synthetase signature 74 87 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 PRINTS Glutamyl-tRNA synthetase signature 45 57 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 PRINTS Glutamyl-tRNA synthetase signature 230 240 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 PRINTS Glutamyl-tRNA synthetase signature 246 254 IPR000924 GO:0000166|GO:0004812|GO:0005524|GO:0043039
Rops4g00407 554 FunFam Glutamate--tRNA ligase, mitochondrial 35 366 - -
Rops4g00407 554 SUPERFAMILY An anticodon-binding domain of class I aminoacyl-tRNA synthetases 351 508 IPR008925 GO:0000049
Rops4g00407 554 Gene3D HUPs 34 366 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00407 Rops-Chr4 12115704 12122422 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00407 K01885 - gmx:100810730 989.178