Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00344 ATGAAGGGTGGAGGGAAGAGGAGGACAACCTCGGAAACATCGAACGATGCTTCTGGTGTTGTCGATTTTGGTGCTGACGGTGTAGATGGAATTGGAGGGCATGGAGATGGTGATGGAAACCAAGATGGTTCTTTGGCTGAAAAGGAGAATACCCAGTTACAGAAAGGAGAATCTGAGGAACCCCATTTGGAAGATTGGGAAGAAGAAGCTGCAGAAGATGAAGAAGAAGCAGAAGAAGAAGAACAAGAACAAGAAGATGGGGTTGTTACAGTGCCTGTACTGGGACAAGGTCCCATGCTTGGTGAAGGCTACTATGAAGTTGAGGCCATACGTCGTAAGAGGGTTCGAAAGGGTCAGCTGCAGTACTTTATCAAATGGCGTGGATGGCCTGAGACAGCCAACACTTGGGAGCCTCCAGAAAATCTGGCATCTGTTCCTGAAGTTGTTGAAGCTTTTGAGGAAAGCTTTAGATCAGGAAAGCATCGTAAGCGCAGACGTAAGCACGTGGTTCATCACACTCAACCGAAGAAGAGGCTGGAGCGTTCTGCCACTCCTTACAGCCTTAGACGATTTCCAGCTAGTACAGTTGAAAACCACACACAGTCTGCCCCTCTCAGTGAGCCTATTATTCCTGATATTCCTGCCTTTCCTCAGACTGTGCTTTTTGCTGATGAGGTAGAAAACAATGGTGATGCCAGCGGTCTTGGAAAAGCCAAACATGCCAATGATAATAGATCTGCGAGTGCTTCAGAAGTTACCGGAAGGAATGAGGAAAATGATTATGATCCTAAGCTTAGTGAACTTAAAGCTACGATGACCAATGGGTATGACGCTGATAAGCTCTCAGTACAGTTTCAAGAAGCTAAGCTTTCAACAGGAAGTCGTCACATGGATAGTCAATTGAAGGGGGTTAGCATAGAACCAGTTCAAAGTGGTCCCTGCAGAGGAGCCAAACGGAGGAAATCTGGTTCTGTGAAGAGGTTTAAGAAAGATTCATATGCTGGAGAGGCTGTTAGTACACAAAAACCTATTGGCATGTCTGTTGGTACAGCTGAGACTGCACGAACTGGGACTGCTGATAATCCGGGTCATAATAGTCATAAGAAGATGGATCATGCTAGACCGGCCTGCAATATTGTCAAGATTGTTAAGCCAGTCGGCTATTCAGCTGCAGTAGCCAGCACCATGCAGGATTGTTCAGTAACATTCATGGCTATGAGGTCTGATGGAACAGAAGTGATGGTTGATAACAAATATCTCAAGGCATACAATCCACTTCTGCTGATCAATTTCTATGAGGAGCATCTCCGCTACTGTCCTTCATCTTGA 1329 0.4582 MKGGGKRRTTSETSNDASGVVDFGADGVDGIGGHGDGDGNQDGSLAEKENTQLQKGESEEPHLEDWEEEAAEDEEEAEEEEQEQEDGVVTVPVLGQGPMLGEGYYEVEAIRRKRVRKGQLQYFIKWRGWPETANTWEPPENLASVPEVVEAFEESFRSGKHRKRRRKHVVHHTQPKKRLERSATPYSLRRFPASTVENHTQSAPLSEPIIPDIPAFPQTVLFADEVENNGDASGLGKAKHANDNRSASASEVTGRNEENDYDPKLSELKATMTNGYDADKLSVQFQEAKLSTGSRHMDSQLKGVSIEPVQSGPCRGAKRRKSGSVKRFKKDSYAGEAVSTQKPIGMSVGTAETARTGTADNPGHNSHKKMDHARPACNIVKIVKPVGYSAAVASTMQDCSVTFMAMRSDGTEVMVDNKYLKAYNPLLLINFYEEHLRYCPSS* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00344 442 SMART chromo_7 104 157 IPR000953 -
Rops4g00344 442 ProSitePatterns Chromo domain signature. 122 142 IPR023779 -
Rops4g00344 442 PANTHER CHROMO DOMAIN-CONTAINING PROTEIN LHP1 1 441 IPR044251 GO:0006325|GO:0031507
Rops4g00344 442 MobiDBLite consensus disorder prediction 62 86 - -
Rops4g00344 442 Coils Coil 63 87 - -
Rops4g00344 442 PRINTS Chromodomain signature 102 110 IPR017984 -
Rops4g00344 442 PRINTS Chromodomain signature 115 129 IPR017984 -
Rops4g00344 442 PRINTS Chromodomain signature 130 142 IPR017984 -
Rops4g00344 442 MobiDBLite consensus disorder prediction 307 328 - -
Rops4g00344 442 MobiDBLite consensus disorder prediction 1 98 - -
Rops4g00344 442 CDD CD_CSD 105 154 - -
Rops4g00344 442 MobiDBLite consensus disorder prediction 156 179 - -
Rops4g00344 442 SUPERFAMILY Chromo domain-like 98 162 IPR016197 -
Rops4g00344 442 SMART ChS_2 368 441 IPR008251 GO:0005634
Rops4g00344 442 MobiDBLite consensus disorder prediction 231 262 - -
Rops4g00344 442 MobiDBLite consensus disorder prediction 159 175 - -
Rops4g00344 442 Gene3D - 63 165 - -
Rops4g00344 442 Pfam Chromo (CHRromatin Organisation MOdifier) domain 105 154 IPR023780 -
Rops4g00344 442 ProSiteProfiles Chromo and chromo shadow domain profile. 105 164 IPR000953 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00344 Rops-Chr4 10198929 10210122 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00344 - - aprc:113849713 563.148