Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00227 ATGTCTCGTGCACCGAACTATGAGTTTCAGGAATGGTGGAACAAACAAAGAGAAAAGAACAACCTCGACCTTTTCGAAGACAAGTCCAACCAGGCCGCGGCGGCGGCGACGACGACCTCCCCTTTCATCGCCGTGGATGTCGGCGGGAACGACGGACGGTTGGATCCGTCGGTGGCGAAGGAACGTTCTCGAAGTGCGCGACAGCTGTCATGGGTTTGCTTGTTGAAGTTCCAGCAAATTGCCTCAACCTTGGGATTATTGTCAAATTCATTACTTTTCATAATCCGGACGGCGAACCGCCGGATCGTCTCACCGGGTTCGCGGGCCGATTCGGCGTCGTCGCGGCTTTACCGTGCGATCAGGGTGTTCCTGATTGTTGTGATTGCTTTGTTAGGGTTTGAATTGGTTGCTTATTTTAAAGGATGGCATTTCCGGCCGCCGGCGGTGGGGTCCGCCGAGGTGATGGGAATGGTGGCGGTTGTCTATGCGCGGTGGCTCGAGATTAGGGCGAGTTACTTGGCGCCACCGTTGCAGTGTTTGGCCAACATGTGTATTGTGTTGTTCATTGTGCAATCAGTTGATAGGATTGTTTTGATCTTGGGGTGTTTTTGGATCAAGTTCAAGAGAATCAAGCCTGTTGCTAATGTGGATTATGAAGGGAGTGTTGAGAGTTTGGAGGATTATCCCATGGTGTTGATTCAGATTCCTATGTGCAATGAGAGGGAGGTTTACCAGCAATCCATTGCAGCAGTTAGTATCATGGATTGGCCAAAGGAGAGAATGCTTGTACAGGTTCTTGATGATTCAGATGAAGTAAATATCCAACAGCTTATCAAGGCAGAAGTGCATAAATGGCAACAAAGAGGTGTTCGGATAATATATAGGCATCGGCTTATACGTACAGGCTACAAGGCAGGGAATCTCAAATCTGCAATGAGTTGTGATTATGTTAAGGATTATGAGTTTGTAGCAATATTTGATGCTGATTTTCAGCCAACACCAGATTTCTTAAAGAAGACAATCCCTTATTTCAAGGGAAAGGATGATTTGGCATTAGTCCAGACTAGATGGGCATTTGTAAACAAGGATGAGAACTTGCTTACAAGATTGCAGAACATTAATTTATCTTTCCACTTTGAGGTTGAGCAGCAGGTAAATGGTGTCTTCATTAACTTCTTCGGTTTCAATGGGACTGCTGGTGTCTGGAGAATAAAGGCTCTTGAGGAGAGTGGTGGCTGGTTGGAGCGAACAACAGTCGAGGACATGGATATTGCTGTTCGTGCTCATCTCTGTGGATGGAAGTTTATATTTCTCAATGATGTTAAGTGCCTTTGTGAACTTCCGGAGACCTATGAGGCATATAAGAAACAACAACACCGCTGGCATTCTGGTCCAATGCAACTGTTTCGTTTGTGTTTTGTCGATATCCTTCGTTCAAAGGTTAGTTGGGGAAAGAAGGCCAATTTGATATTTCTTTTCTTCCTTCTGAGGAAGCTTATTCTGCCGTTTTATTCATTCACCCTCTTCTGCATCATTCTTCCATTGACCATGTTCCTTCCAGAAGCTGAGCTCCCAGCCTGGGTTGTTTGTTACATTCCTGGAGTAATGTCCATCCTAAGTGTTCTTCCAGCTCCACAGTCATTTCCATTTATAGTGCCTTACCTTCTATTTGAGAACACTATGTCAGTAACTAAATTTAATGCCATGATATCTGGATTATTTCGCTTTGGAAGTTCATACGAGTGGGTGGTCACAAAAAAATCAGGAAGATCATCAGAGACAGATTTGGTTGCCCTTGAGAAGGAATCTGAACCTCTAATGCGATCTACTAGTCTTCATAGATCATCCTCAGAATCAGGCATTGAGGAATTAAGCAAACTAGAATTGTCAAAGAAAACTGGGAAGACCAAGAGAAATCGTCTCTTCAGGAAAGAACTTGCTCTTGCATTTATTTTGTTAACTGCCTCAGTTAGAAGCTTGTTATCTGCCCAAGGAATTCATTTCTACTTCCTATTATTTCAAGGGATAAGCTTTTTGGTTGTTGGTCTTGATTTGATTGGAGAACAGGTTAGTTAA 2076 0.4408 MSRAPNYEFQEWWNKQREKNNLDLFEDKSNQAAAAATTTSPFIAVDVGGNDGRLDPSVAKERSRSARQLSWVCLLKFQQIASTLGLLSNSLLFIIRTANRRIVSPGSRADSASSRLYRAIRVFLIVVIALLGFELVAYFKGWHFRPPAVGSAEVMGMVAVVYARWLEIRASYLAPPLQCLANMCIVLFIVQSVDRIVLILGCFWIKFKRIKPVANVDYEGSVESLEDYPMVLIQIPMCNEREVYQQSIAAVSIMDWPKERMLVQVLDDSDEVNIQQLIKAEVHKWQQRGVRIIYRHRLIRTGYKAGNLKSAMSCDYVKDYEFVAIFDADFQPTPDFLKKTIPYFKGKDDLALVQTRWAFVNKDENLLTRLQNINLSFHFEVEQQVNGVFINFFGFNGTAGVWRIKALEESGGWLERTTVEDMDIAVRAHLCGWKFIFLNDVKCLCELPETYEAYKKQQHRWHSGPMQLFRLCFVDILRSKVSWGKKANLIFLFFLLRKLILPFYSFTLFCIILPLTMFLPEAELPAWVVCYIPGVMSILSVLPAPQSFPFIVPYLLFENTMSVTKFNAMISGLFRFGSSYEWVVTKKSGRSSETDLVALEKESEPLMRSTSLHRSSSESGIEELSKLELSKKTGKTKRNRLFRKELALAFILLTASVRSLLSAQGIHFYFLLFQGISFLVVGLDLIGEQVS* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00227 691 Pfam Glycosyl transferase family group 2 323 528 IPR001173 -
Rops4g00227 691 SUPERFAMILY Nucleotide-diphospho-sugar transferases 228 507 IPR029044 -
Rops4g00227 691 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 161 688 - -
Rops4g00227 691 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 221 446 IPR029044 -
Rops4g00227 691 FunFam probable xyloglucan glycosyltransferase 5 222 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00227 Rops-Chr4 7325693 7336794 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00227 1 691 Miscellaneous Gene Families AT3G07330 74.532 0.0 1065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00227 - - gmx:100801779 1146.34