Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00216 ATGGCTATGGCTTTGATTTCTCTGTTTATCTTCTCCATCTTGTTCTCCATATCAAGTGCAGAAATCTCAGCTAGGCCAGGAGTGAACTATGGCCAATTGGGCAACAACCTACCACCACCAACAACCTCAGTGAACCTCATCAAATCCTTAAAAGCCAAACGTGTGAAAATCTATGACACAAACCCAGAAATCCTCAGAGCCCTTGAAAACACTAACCTCCAAGTCTCCATCATGGTCCCAAACCAACTTGTCACCAACATTTCAACCAACCAAACACTCTCTAACCAATGGGTCCAATCCAATGTAGTACCCTTCTACCCCAAAACACAAATTCGTTACCTCCTTGTTGGAAACGAACTCATCAGCACCACAACCAAGGAAACATGGCCCCACATCGTTCCCGCAATGCAAAAAATAAAAAATTCCCTCACAAAATTTGGTTTACACAAAATAAAAGTGGGAACCCCTTCTGCTATGGACGTTTTGGAATCGTCGTTTCCACCCTCAAACGGCACTTTCAGAAACGACATTGCTTTTAGTGTTATGAAACCCATGTTGGAGTTTTTACATGAAACTAACTCTTTTTTCTTCTTAGATGTGTACCCTTTTTTTGCTTGGTCTTCGGATCGGGTTAATATTGACCTTAATTATGCTCTTTTTGATTCCAATAATATAACGATTATGGATTCGGGTACAGATTTGGTGTATACCAATTTGTTTGATCAAATGGTGGATGCCGTTTATTTCGCAATGGAGCGGCTCGGGTATCCGGGTATTCGAATCTTTATCGCCGAAACGGGTTGGCCCAATAAAGGAAATTTGGACCAAATTGGCGCGAATATTCATAATGCTGCCACGTATAATAGAAATTTTGTTAAGAAAGTGACGAAAAAACCATTAGTTGGGACTCCGGCTCGACCGGGTTCGATTTTACCGTCATTTATTTTTTCTTTGTTTAATGAGAACTTGAAACCGGATTTGGATACGGAGCGACATTTCGGGTTGTTTTACCCGAACGGGTCAAGTGTTTATGAAATGGATCTTTCAGGAAAAGAGACCGATTTTGCACCATTGCCACCGCCGGAGGATTATAAAGGGAAGGCATGGTGTGTGGTGGCAAAGGGAGCGAATGAGACGGCGGTGATGGCAGCGTTATCGTATGCTTGCTCGCAAGGGAATCGGACATGCGACTTGATCCAACCCGGGAAATCATGTTTTAAACCTGATTCGTTGGTGGAACATGCTAACTATGCGTTTAGTTCTTATTGGACGCAATTTAGGGCTATTGGTGGAACATGTTACTTCAATGGTCTCGCCAAGGCAACTTCAAAGGATCCAAGTTATGGATCTTGTAAGTTCCCAAGTGTGACTCTTTGA 1377 0.4256 MAMALISLFIFSILFSISSAEISARPGVNYGQLGNNLPPPTTSVNLIKSLKAKRVKIYDTNPEILRALENTNLQVSIMVPNQLVTNISTNQTLSNQWVQSNVVPFYPKTQIRYLLVGNELISTTTKETWPHIVPAMQKIKNSLTKFGLHKIKVGTPSAMDVLESSFPPSNGTFRNDIAFSVMKPMLEFLHETNSFFFLDVYPFFAWSSDRVNIDLNYALFDSNNITIMDSGTDLVYTNLFDQMVDAVYFAMERLGYPGIRIFIAETGWPNKGNLDQIGANIHNAATYNRNFVKKVTKKPLVGTPARPGSILPSFIFSLFNENLKPDLDTERHFGLFYPNGSSVYEMDLSGKETDFAPLPPPEDYKGKAWCVVAKGANETAVMAALSYACSQGNRTCDLIQPGKSCFKPDSLVEHANYAFSSYWTQFRAIGGTCYFNGLAKATSKDPSYGSCKFPSVTL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00216 458 Gene3D Glycosidases 26 356 - -
Rops4g00216 458 SUPERFAMILY (Trans)glycosidases 27 347 IPR017853 -
Rops4g00216 458 FunFam Glucan endo-1,3-beta-glucosidase 14 24 353 - -
Rops4g00216 458 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 26 442 IPR044965 GO:0004553|GO:0005975
Rops4g00216 458 SMART X8_cls 368 453 IPR012946 -
Rops4g00216 458 Gene3D - 364 456 - -
Rops4g00216 458 FunFam Glucan endo-1,3-beta-glucosidase 4 363 457 - -
Rops4g00216 458 ProSitePatterns Glycosyl hydrolases family 17 signature. 259 272 IPR000490 GO:0004553|GO:0005975
Rops4g00216 458 Pfam X8 domain 369 439 IPR012946 -
Rops4g00216 458 Pfam Glycosyl hydrolases family 17 27 347 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00216 Rops-Chr4 7135477 7138853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops4g00216 22 458 Glycoside Hydrolase AT3G23770 54.831 0.0 512
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00216 - - ccaj:109805358 702.975