Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g02046 ATGGCCAACAGTAACCTCCCTCGAAGAATCATCAAGGAAACACAGCGGTTGCTTAGTGAGCCAGCACCTGGAATTAGTGCTTCCCCTTCAGAAGACAATATGCGATATTTCAATGTGATGATCCTTGGGCCAACCCAATCACCTTATGAAGGAGGAGTTTTCAAGTTAGAACTATTTTTGCCAGAAGAATATCCAATGGCTGCTCCAAAGGTTAGGTTTCTGACAAAGATATATCATCCGAACATTGATAAGCTTGGCCGGATTTGTCTTGATATTCTGAAAGATAAGTGGAGTCCTGCCCTTCAGATACGCACTGTTCTCTTGAGCATTCAAGCTCTTTTGAGTGCACCAAACCCTGATGATCCACTTTCTGAGAACATTGCCAAGCATTGGAAATCTAACGAGGCTGAGGCTGTTGAAACAGCAAAGGAATGGACGCGATTATATGCTACTAGCAACTGA 462 0.4351 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVETAKEWTRLYATSN* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g02046 153 SUPERFAMILY UBC-like 7 151 IPR016135 -
Rops3g02046 153 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 5 151 IPR000608 -
Rops3g02046 153 SMART ubc_7 8 151 - -
Rops3g02046 153 FunFam Ubiquitin-conjugating enzyme E2 36 1 152 - -
Rops3g02046 153 Gene3D Ubiquitin Conjugating Enzyme 1 153 IPR016135 -
Rops3g02046 153 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 78 93 IPR023313 -
Rops3g02046 153 Pfam Ubiquitin-conjugating enzyme 9 145 IPR000608 -
Rops3g02046 153 CDD UBCc 7 146 IPR000608 -
Rops3g02046 153 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 33 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g02046 Rops-Chr3 37030130 37037561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g02046 8 118 Miscellaneous Gene Families AT3G17000 29.060 1.44e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g02046 K10580 - zof:122002599 307.375
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g02046 3 37030130 37037561 Rops3g02046 3 37030130 37037561 ECH