Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01678 ATGAGTATTATTAGTATTAGTATTACTCTTTTCCTCATAACCCAACTCCTTGTGAGGGCAGAATCAATAAGCAGAGAAGATTTTCCAGAAGGGTTTATCTTTGGAACTGCTTCTTCTGCTTACCAGTTTGAGGGTGCTGTTGATGAAGGAAATAAAGGAGATAGCATATGGGATACTTTCTCAAAAATACCAGGCAGAATTGTGGACTTCAGTAATGCAGACACAGCAGTGGATCAATATCACCGATTTCAGCATGATATAAACTTGATGAAGGATTTGGGAATGGATTCTTACAGATTTTCCATATCATGGCCAAGGATTTTCCCAAATGGAACAGGGGAACCCAATATAGAGGGAATAAAATATTACAACAGCCTCATTGATGCTTTACTTGAGAAAGGAATCCAGCCTTTCGTAACTCTATATCATTGGGATCATCCACAGATGCTTGAAGATAAATATGAAGGATGGTTAAGCACACAAATCATAAGTTACCAACTACATTTCAAGGAACTACAAGGAGGTCAAATAGGGATAGCACTAGATGCTGTTTGGTATGAACCAATAACTGAACTTGATGAAGACAAAGATGCAGCAGCCAGAGCCATGGACTTTTCACTTGGATGGTTCCTTGACCCACTTTTCTTTGGAAAATATCCTCTCTCAATGCAAAAACTTGTAGCTGAGAGATTGCCAGAGATTTCTGATGCAACCTCAAACTTGCTTGTGGGATCTTTGGATTTTATTGGCCTAAATCACTATACCTCAGTGTATACTCGTAACGACAGGACTCGAATTCATAAACTGATTATGCAGGATGCTATATCTGATGTTGCTGTCATCACAACTGCATACAGAAGAGGAGCTACAATTGGAGAAAAGGCAGCTTCTAGTTGGTTGCGCATTGTCCCATGGGGCATCCGAAAGTTGGTAAAACATGTGAAAAGAAAATATGGGGACACACCAGTTATTATTACTGAGAATGGAATGGATGACCCAAGCAGACCCCTTATGACCTTAGAAAAGGCTTTACAGGATGACAAGAGGATAAGTTACCATAGGGACTATCTCTCAAACCTATCTGCTGCTATAAGGCAAGATGATTGCAATGTGAGGGGTTACTTTGTGTGGTCATTGCTTGATAATTGGGAGTGGAACATGGGATATACTGTACGCTTTGGGCTCTACTATGTGGATTTCAGGAACAACCTTACTAGGATACCAAAAGCTTCGGTGCAATGGTTCAAAGACATGCTTAGATTAGAAACAGAAAAGATTAGTGAAATTTGA 1290 0.3977 MSIISISITLFLITQLLVRAESISREDFPEGFIFGTASSAYQFEGAVDEGNKGDSIWDTFSKIPGRIVDFSNADTAVDQYHRFQHDINLMKDLGMDSYRFSISWPRIFPNGTGEPNIEGIKYYNSLIDALLEKGIQPFVTLYHWDHPQMLEDKYEGWLSTQIISYQLHFKELQGGQIGIALDAVWYEPITELDEDKDAAARAMDFSLGWFLDPLFFGKYPLSMQKLVAERLPEISDATSNLLVGSLDFIGLNHYTSVYTRNDRTRIHKLIMQDAISDVAVITTAYRRGATIGEKAASSWLRIVPWGIRKLVKHVKRKYGDTPVIITENGMDDPSRPLMTLEKALQDDKRISYHRDYLSNLSAAIRQDDCNVRGYFVWSLLDNWEWNMGYTVRFGLYYVDFRNNLTRIPKASVQWFKDMLRLETEKISEI* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01678 429 Gene3D Glycosidases 168 420 - -
Rops3g01678 429 Pfam Glycosyl hydrolase family 1 167 420 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 Gene3D Glycosidases 11 167 - -
Rops3g01678 429 SUPERFAMILY (Trans)glycosidases 22 419 IPR017853 -
Rops3g01678 429 FunFam Beta-glucosidase 12 162 421 - -
Rops3g01678 429 ProSitePatterns Glycosyl hydrolases family 1 N-terminal signature. 32 46 IPR033132 -
Rops3g01678 429 PANTHER GLYCOSYL HYDROLASE 165 423 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 PRINTS Glycosyl hydrolase family 1 signature 346 357 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 PRINTS Glycosyl hydrolase family 1 signature 323 331 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 PRINTS Glycosyl hydrolase family 1 signature 392 404 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 PRINTS Glycosyl hydrolase family 1 signature 245 259 IPR001360 GO:0004553|GO:0005975
Rops3g01678 429 PRINTS Glycosyl hydrolase family 1 signature 368 385 IPR001360 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01678 Rops-Chr3 27396814 27401184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01678 165 419 Glycoside Hydrolase AT1G26560 54.510 4.67e-101 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01678 K01188 - gmx:100783543 485.723
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01678 3 27396814 27401184 Rops3g01678 3 27396814 27401184 ECH