Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01649 ATGCGTGCCCCAACCGCTAGAAAACTTTGCACTCTCAGCTCCTTTTTCCGTTCACATTTGCACCGCAAACCCAAAAACAACGTTTCCTCTGTCAAAATATCATCTTCTTCTGAACCTGAACAAGATTTTGGTTCTGGCTTGCACCTCTCAGCCCTCAACCTTAGCCGTTCCTCTCCCCAAGAGGATTCGCCTGATGGAGATGCTGTTACTTCTCAGCTTTCTTCTATATTGTACTCTCCTCCAGAAAAGAATGTGGTTTCCGAGGAAAATGACAATGACGAAAGAGGGGGAAAAATGATAGATATTCCATGGATACCAGACTTGCCTCATGGTGATGTGTCACTTAAAAGGAAGGAGGTATCTCGCGAGAGGAAACAAAAATGGATTTTTAAATACACAGGTGATAACCGATTTGATAGGTTACTTAAAATGTGTGCAAAGAAACTGGGAACAAGAGCCACCGTTGATGTGTTTGGCCACTTAGGGCGAGAAACAGGTCTGAAAGAGTACAATGCATTGATAAACATGTGCATAAAGAAGGCTAGGGCAACTGACAATGAATACATTGCCATGGAAGAAACGCATAAGGCTTTTCAACTTTTCAAATTAATGAGGGAACGTGGTTTTCAGCTAGAAGAGCAAACATATCACCCACTTCTTCAGTATATAATTGACATGGGTATGGTTGAAGAATATCAACTTTTGTCCGATATTCTTAAAACTGAGAATCCCAGTTCAACTTCCCGGTTGGGTTACTATGAAATGATGCTGTGGATAAGAGTCAATGACGAAGAAATGATCCGGGATATTTGTGAATATATTACAGTTGAAGATAGTGAAGACACTTCTGTGTTACGAGAAAATTACTTATTAGCTCTTTGTGAAAGTGATCGGAAGACACAGATTTTGGACGTGTTGAAAAATATAGACATAACAAAGCTTACATCTACAGAATCCATAGCAAATATATTCCGATCGTTAGGAAGGCTATTGCTGGAATCTGATGCGGAGAATTTACTCTTGGATTTGAGAGCACGTGATCATGATGCAGATGATATTTCAAACTTCATAATTAGTTATGCTGTTAGCATTCCAAATTTAGTGGTCGAGGATATCATCTCAAAAATCAAGCATTTGCATGAAGTATTGGAAGTTTTGCCTTCATCCTTGTCATATGAAAAGCTCATTTTGTATTGCTGTGGCTTACACAAGGTGGATGTAGCTCTTGATATTGTTGATGAAATGTGTGAAGCAGGATTTACGTTGTCTACTGAGGTGTTACAATCCATATTACAAATTTGTGAGGCAACTTATGATTATATTGTGGTCCACCGGATCTATTCCATCATATGCCACCACCATGTGGAGTTGAATGGAGAAATATGCAGGTGTTTGGTGCACTTTTGCGTAAGGATAAAAGATTTTGAAGGTGCATACAAGATGGTTGATGGCTTGCAGGAAATGAATTTCAAACCTACATCGGCCATGTACAATGCTATAATGGCAGGATATTTTCGTGAGAAAAACACCAGTGGTGCATTGAGGGTCCTCAAACACATGCAAGGTGCCAACGTAAAACCTGATTCACAAACTTTCAGCTATTTGATTAGCAATTGTGAAAAGGAAGAGGATGTAATCAAGTATCATGAAGAAATGAAGCAATTTGGAGTCCAAGCTACAAAGCATATTTTTATGGCCCTTATTAATTCATATGCAGCTTGTGGCAAATTGGAGATGGCAAAACAGGTAGTTTCAGATCCAGACATACCATTCAAGAGTTTAAATGAAATTAAGAGTGTCCTTGTCTCAACTCTTGCACATCATGGGCAATTGTCTGAGGCACTTCTTGTATATGAAGAGATCAAGAAAGCTGGACACAATTTGGAGCCAAAAGCTGTTATAAATCTCATCGATGAGTTGAGTAAATTAAATGGAGAGTTGGATGGGTTGCTTCTTCTACTTAAGGAACTGAGTGATCAAGACTATTGGGTTGATGGTTGCATCAGGGTGACCAAGTATTGTGTTGAGAACAATCATTTAAGTTCTGCTATTGATTTGTTCAAGCAACTCAAGGATAAGTTCAAAAGTGATGAAATAGTAATGGAAGCACTATTTGATGCGGTATTTTCTCTAATTGCAACATCATCTGAGTCCACTCATTTACAGTTTGGCCTGGACTTGCTTTGGGCAATCAAGGATGAACTAGGCCTTGTTCCTTCACGGCAGTGTCTTGATTTTCTTCTAAGCGCTTGTGCGAATGCTGGAGATTTGAATAATGCTCGTTTGATTTGGAGAGAATATGAGGTTGCTGGATTTCCTTACAATGTACTAAGTTACTTGAGGATGTATCAGGCACTCTTAGCATCAGGAGATTATAGATCTGCTAACTTGATGCTCAAGAAAATTCCGAAAGATGATCCCGAGGTTTGTTCTATCATCTTTGCATGTCAAGAAACTTACTGTGATGATCTTAACCCTGGAGAAGGGGGGAAGAAGAAACAGAAAGGAAAGAAAAAGAAAAAAAAGAAGGGGACTTGA 2538 0.392 MRAPTARKLCTLSSFFRSHLHRKPKNNVSSVKISSSSEPEQDFGSGLHLSALNLSRSSPQEDSPDGDAVTSQLSSILYSPPEKNVVSEENDNDERGGKMIDIPWIPDLPHGDVSLKRKEVSRERKQKWIFKYTGDNRFDRLLKMCAKKLGTRATVDVFGHLGRETGLKEYNALINMCIKKARATDNEYIAMEETHKAFQLFKLMRERGFQLEEQTYHPLLQYIIDMGMVEEYQLLSDILKTENPSSTSRLGYYEMMLWIRVNDEEMIRDICEYITVEDSEDTSVLRENYLLALCESDRKTQILDVLKNIDITKLTSTESIANIFRSLGRLLLESDAENLLLDLRARDHDADDISNFIISYAVSIPNLVVEDIISKIKHLHEVLEVLPSSLSYEKLILYCCGLHKVDVALDIVDEMCEAGFTLSTEVLQSILQICEATYDYIVVHRIYSIICHHHVELNGEICRCLVHFCVRIKDFEGAYKMVDGLQEMNFKPTSAMYNAIMAGYFREKNTSGALRVLKHMQGANVKPDSQTFSYLISNCEKEEDVIKYHEEMKQFGVQATKHIFMALINSYAACGKLEMAKQVVSDPDIPFKSLNEIKSVLVSTLAHHGQLSEALLVYEEIKKAGHNLEPKAVINLIDELSKLNGELDGLLLLLKELSDQDYWVDGCIRVTKYCVENNHLSSAIDLFKQLKDKFKSDEIVMEALFDAVFSLIATSSESTHLQFGLDLLWAIKDELGLVPSRQCLDFLLSACANAGDLNNARLIWREYEVAGFPYNVLSYLRMYQALLASGDYRSANLMLKKIPKDDPEVCSIIFACQETYCDDLNPGEGGKKKQKGKKKKKKKGT* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01649 845 Coils Coil 640 660 - -
Rops3g01649 845 Gene3D Tetratricopeptide repeat domain 442 544 IPR011990 GO:0005515
Rops3g01649 845 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 493 527 IPR002885 -
Rops3g01649 845 Gene3D Tetratricopeptide repeat domain 670 844 IPR011990 GO:0005515
Rops3g01649 845 MobiDBLite consensus disorder prediction 26 45 - -
Rops3g01649 845 PANTHER OS02G0132600 PROTEIN 6 841 - -
Rops3g01649 845 MobiDBLite consensus disorder prediction 80 100 - -
Rops3g01649 845 Gene3D Tetratricopeptide repeat domain 134 441 IPR011990 GO:0005515
Rops3g01649 845 MobiDBLite consensus disorder prediction 86 100 - -
Rops3g01649 845 MobiDBLite consensus disorder prediction 823 845 - -
Rops3g01649 845 NCBIfam pentatricopeptide repeat 496 529 IPR002885 -
Rops3g01649 845 Gene3D Tetratricopeptide repeat domain 545 666 IPR011990 GO:0005515
Rops3g01649 845 MobiDBLite consensus disorder prediction 27 45 - -
Rops3g01649 845 Pfam PPR repeat 600 625 IPR002885 -
Rops3g01649 845 Pfam PPR repeat 564 584 IPR002885 -
Rops3g01649 845 Pfam Pentacotripeptide-repeat region of PRORP 397 541 IPR033443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01649 Rops-Chr3 25705104 25725666 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01649 327 690 Glycosyltransferase AT1G05670 22.895 6.21e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01649 - - cam:101502375 1224.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01649 3 25705104 25725666 Rops3g01649 3 25705104 25725666 ECH