Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01377 ATGAGCCGTTACGATCCTAACCCCTTCGAAGAAGAAGAGCAAGAGGTTAATCCCTTTTCGGATGGAGCAGCTAGAGGAAAAGGGTCAGGGCAATCAAGTTATGGTGGAGGTGCATTTTATACTACTAACCCTGGAAGTGTTCCCTCTGCAACCTCAAGGCTCTCACCCCTTCCCCCAGAGCCTTATGATCGTGGGGCAACTATTGACATCCCTCTTGATAGCTCAAAGGACAGCAAAGCAAAGGAGAAGGAACTTCAAGCTAGAGAGGCTGAATTGAAAAGAAGGGAACAGGAACTAAAACGAAGGGAGGATGCTATAGCACAAGCTGGAATAGTTATAGAGGAAAAAAATTGGCCACCTTTTTTCCCCATCATTCATCATGACATTGCAAATGAAATACCAATACATCTTCAAAGGATGCAGTATGTTGCATTTACAACATGGTTGGGTTTGGTTCTGTGTCTTGTGTGGAATATTGTGGCAGTTACTACTGCTTGGATCAAAGGAGAAGGTCCAACCATCTGGTTTCTTGCTATTATCTATCTTATTTCTGGTGCTCCAGGATCCTATGTGTTGTGGTATCGCCCTCTTTATCGTGCTATGAGGACCGACAGTGCTCTGAAGTTTGGCTGGTTTTTCGTGGTTTACATGTTGCACATTGCCTTTTGCATTTTCGCCGCAGTAGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACAGGTATTTTGGCTGCGATCGATGTGTTGGACATCAGTGCATTGGCTGGGATATTCTACTTTATTGGGTTTGGATTATTCTGTCTTGAGACAGTGCTGAGCATCTGGGTTATTCAGCAAGTATTGATGTACTTCCGCGGCAGTGGCAAGGCTGCAGAGTTGAAGCGTGAGGCTGCGAGGGGGACAATGATGGCAGCTCTATGA 921 0.4517 MSRYDPNPFEEEEQEVNPFSDGAARGKGSGQSSYGGGAFYTTNPGSVPSATSRLSPLPPEPYDRGATIDIPLDSSKDSKAKEKELQAREAELKRREQELKRREDAIAQAGIVIEEKNWPPFFPIIHHDIANEIPIHLQRMQYVAFTTWLGLVLCLVWNIVAVTTAWIKGEGPTIWFLAIIYLISGAPGSYVLWYRPLYRAMRTDSALKFGWFFVVYMLHIAFCIFAAVAPPIIFKGKSLTGILAAIDVLDISALAGIFYFIGFGLFCLETVLSIWVIQQVLMYFRGSGKAAELKREAARGTMMAAL* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01377 306 Pfam SCAMP family 115 286 IPR007273 GO:0015031|GO:0016020
Rops3g01377 306 PANTHER SECRETORY CARRIER-ASSOCIATED MEMBRANE PROTEIN SCAMP 4 303 IPR007273 GO:0015031|GO:0016020
Rops3g01377 306 MobiDBLite consensus disorder prediction 34 53 - -
Rops3g01377 306 Coils Coil 75 105 - -
Rops3g01377 306 MobiDBLite consensus disorder prediction 1 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01377 Rops-Chr3 20287598 20295853 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01377 3 306 Miscellaneous Gene Families AT1G11180 65.595 3.28e-143 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01377 K19995 - gmx:100814913 541.576