Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01376 ATGGAAACCCAACACAACAACGGGTCGGATCGTGACCCGAACCCTATTGTTGCACAGACACCGGAACCTGAACCTGAACCTGAAAAGCTTCAAACTTTGGATTGTTCCATTCCAATTGAAGAAGGTGTGGAGAAGATCACTTTAGTGGGTGACTCTCTTTCAAATGAGGAAAAGAATGGTGATAAGGATGATACTGAAAGCGAGAGCGAAAGTGAAAGTTCAGAGTCAGAGAGTTCTTCTTCTTCTTCTGATTCTGGCAGTGAAAGCAGTAGTAGTAGTGATAGCGATGATGATGATGATGAGGAAACACGCCGTGATGTTGATGTGGAAGTGGAAGATGGTGAGGTAAGTGGTTGTGATGATGGAGAGAAGATGGTTAGTTGGAGCATGGTTGATGATGATATGGATAATGATGATGATGCTGTAGGAGGACCCATTAGGTCAAAGAATGAGCTTCAGAATCTGCCTCCAGTTCCTCCGGTCGATGTGACCTTAGAACCACGCCATCAGTTGTTGCCAGTGGGTGTTATTATGTCGATTATCGATGCTAAGGTCATTGTGGAAGGAGTGGAGAAGCATGACCCTCTTAATGAGGGTTCTATTCTCTGGTTAACTGAAAGCCGAAAACCACTAGGTTTAGTTGATGAAATCTTTGGGCCGGTCAAAAATCCTTATTATGTTGTGAGATACAATTCTGAAAATGAAGTCCCTGTGGGGATCCATGGGGGAATCTTGGTCTCGTTTGTTCCTGAATTTGCCGATCATGTGCTTAATAACAAGAATCTTTGTAAGAAAGGGTATGATGCATCTGGTGTTAATGATGAAGAGTTGTCTGATGAAATAGAGTTTTCAGATGATGAGAAAGAGGCTGAATACAAGAGAGCGCAACGAATGACAAAGAGAGGCGTAAATGATCAAAATCCTGGCAAGAGGAAAAACAATAGAAAGAAACATTCATCGGAAGAGTATGTGGTACCTACCATCCCTGATGCACCTGGTGCACCATTGCATGATCATGGAAATTGTTCAACTTTTCCAGGCACTGGACAAGGTCTTCTGGGGGGAACTACCACAGTTCCACCATTTCCACCCTTAAATACAGCTCCTAACTTTGCTACAAATGGAGTTTGGACAAACGGGACAACACTTCCGCAGCAGCCACAGCCTGCCCTACTTCCTAATGGATTTTCTACAAATGGCATATCATGTTACCCGCAAAACACTCAAATATCTCGTCAGTTCCCTGTGCAAGGAATTCCATTTCAACAGCAATTGCATCCCAGTCACTTATCTCTTATTGCAGCTATGCTGCCTGGGGTACAGCCCAATATATTTGCACAACCAATGTATGCACAGGGACTTGTAGGTCAAAACCAAATGACATTTGGTTTAAGCTCACCCTTCCCACAGATTCAGCCACCTATTTTTCCTTCCCAACAGGGTTTTCCATCCAATGAATTGCAGCCAGAAAGAAACCTTAATTTGCATTCTAGTACTATTTCTGGTGCCCCCCCTCAATTTCATCCAGGCACATCTGCTAACCGTGGGAGAAAAACATTTCATGGTGCTGGTAGGAAAGGGTGGCGACCAGCCAAGTGA 1599 0.439 METQHNNGSDRDPNPIVAQTPEPEPEPEKLQTLDCSIPIEEGVEKITLVGDSLSNEEKNGDKDDTESESESESSESESSSSSSDSGSESSSSSDSDDDDDEETRRDVDVEVEDGEVSGCDDGEKMVSWSMVDDDMDNDDDAVGGPIRSKNELQNLPPVPPVDVTLEPRHQLLPVGVIMSIIDAKVIVEGVEKHDPLNEGSILWLTESRKPLGLVDEIFGPVKNPYYVVRYNSENEVPVGIHGGILVSFVPEFADHVLNNKNLCKKGYDASGVNDEELSDEIEFSDDEKEAEYKRAQRMTKRGVNDQNPGKRKNNRKKHSSEEYVVPTIPDAPGAPLHDHGNCSTFPGTGQGLLGGTTTVPPFPPLNTAPNFATNGVWTNGTTLPQQPQPALLPNGFSTNGISCYPQNTQISRQFPVQGIPFQQQLHPSHLSLIAAMLPGVQPNIFAQPMYAQGLVGQNQMTFGLSSPFPQIQPPIFPSQQGFPSNELQPERNLNLHSSTISGAPPQFHPGTSANRGRKTFHGAGRKGWRPAK* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01376 532 MobiDBLite consensus disorder prediction 1 122 - -
Rops3g01376 532 MobiDBLite consensus disorder prediction 91 117 - -
Rops3g01376 532 Pfam Gar1/Naf1 RNA binding region 173 234 IPR007504 GO:0001522|GO:0042254
Rops3g01376 532 Gene3D Probable tRNA pseudouridine synthase domain 143 242 IPR038664 -
Rops3g01376 532 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX NON-CORE SUBUNIT NAF1 34 480 IPR040309 GO:0000493|GO:0003723|GO:0005732|GO:0042254
Rops3g01376 532 MobiDBLite consensus disorder prediction 74 90 - -
Rops3g01376 532 FunFam H/ACA ribonucleoprotein complex non-core subunit NAF1 143 249 - -
Rops3g01376 532 MobiDBLite consensus disorder prediction 278 322 - -
Rops3g01376 532 MobiDBLite consensus disorder prediction 495 532 - -
Rops3g01376 532 MobiDBLite consensus disorder prediction 287 322 - -
Rops3g01376 532 MobiDBLite consensus disorder prediction 139 160 - -
Rops3g01376 532 SUPERFAMILY Translation proteins 173 234 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01376 Rops-Chr3 20268521 20271284 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01376 K14763 - gmx:102660668 607.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01376 3 20268521 20271284 Rops3g01376 3 20268521 20271284 ECH