Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01323 ATGTTTAGATTTTCTTGTTTCCATGCTAATGTCCAAGGCAACAAGGCAAAGAAAACAGTTCAGCCTTCTACTGAAACAATGGTGAAGACTTCGCAAGATGGTTCCCAAAATCAAGTCTGTAAAGATTCATCTAGCCCTGCAAGCTCAAATTCATCACTTAAACAAATGAACGTCATTAAGAATCATATTAGCAATTGGGATTCAGTTGAGCGCATTGGTAGGCCAGAGGATCTGAATAGAAAGCTTTCCTTTGAACGTGACAAAGAAATTCACCATACTGGGCATCTTAAGAAAAGCCAGTCTGTGGAAAGTGGGCTTTACCAAAGGTTAACTGAGGGTGATGAGGATCTGGGGTTTTCTTGTGATAGTTCCAAAAGCCACAATGACTCAACAACTTCAATTAGCAGAAAGTATCATGATGCCAACCCCATTGATCAGTGTAAAAAGAATCCAAACTCGGAGTCTCAAATCATTTCAGGTCTTGCAAATGATGTCTCACTTTTTTCAATAGGAGATGAAACACCTTCAGATAAAGGTGCCCACGAAAGTTCTGATACTCCATTATCTGGTGAATTAGCTGGTGACTCTGCTGAACGGAATTCTGGTCCCGGCACCCCATCTATAATGAAGTCACATTCTTTACCCGATATCAAAGCTGCTACACTTTCTCCTGGAAAGTATGCTTTTAAACATGCAACTTCAATGTCAAGATCTTTTGATGATCTTCAAGCTTTAGGCATGAAGCAGAAAGAGGTATTCATCAACGAGTCTGATGATCAAATAAGGGAAGATCAAGAAAGAGAGAATAACATGGGAAAAACTGAAGATAATCATAATCATATGGACAGATACTTTCATGATGGTTTTGATTCTTATATGCTTTCTGGTTCAGCAAAAGACTGGGTAATGCCAATTACAGATGATATAAGTGATGTCAAAACCCTTCAAGGAGATTCCTCAGTTAATTGCTCGGGTGAATTTCCTAAGAAAGATTTTAAGATTAAGCGCATTGAGGATTGGGTAACAGATCTACAGCATTGTGGACCACCTCTAGAGGAAACAAATGAATTGTCTGAATCAGTTGATCCCTTGGTTGATGTTAACACCATTAATGGTGTGACTGCTGCAGTTGTGGATCATAAGATCACTCCAGGAATGGAAGCGGCCAAAAGATATATATCTTCTTTGAGTGCTAATGCCACTACAGCTCAGCTGGCAAATCATGGGTTGGTTGTGATACCCTTTATGAGTGCGTTTGTGAGTTTGAAGATGCTCAATTTGGCTGGAAACTCTATTGTGAGGATAACTGCTGGTGCTCTTCCTCGGGGGCTTCACACGTTGAATTTGTCAAAAAACAATATCTCCACCATAGAGGGATTACGTGAACTTACTCGCCTTCGTGTCCTAGACCTCAGCTACAACCGTATATTAAGAATTGGACACGGCCTTGCATACTGTTCATCTTTGAAGGAGCTGTACCTAGCTGGAAACAAGATTGGTGAAGTAGAGGGTCTGCACCGCCTCTTGAAACTAAGCATCCTTGATCTCCGTTTCAACAAGATTTCAACAGCCAAATGTCTGGGCCAACTTGCAGCTAACTATAATTCATTGCAAGCTATCAACTTGGAAGGGAACCCTTGTCAAAAAAATGTTGGAGAAGAACAACTGAAGAAATATCTGCAAGGCCTTCTTCCCCATCTTGTCTACTACAATAGGCAACCTATCAAAGTGAGCACTTTGAAGGATGGTGCAGATCGTGCAGTTCGGTTAGGAATGAATTCCCAACAATTTGATCGTGGCCTTAGAGTGGATCGTAAGGCTACAAGGAAGAGCAGCCATGGTGTTGTAGCGGCTCGAAGGTCATCATCATCTTCTTCCTCTTATGCTCACAGAAGTCAAAATGTCGACTCATTAAAACCATCCAAAGGAAAGCAAGGCCATCTGCCACTGCCACCTATCAGAACCAAAGTATCAACACAAAATCGATATCATTTTGATGCTCCCAGCAAAGGTTCAGGGCGCTCCATTCGCAAGAGTCGCAGTGAGGGAACTCTTGGAGCTTTGTGA 2067 0.4161 MFRFSCFHANVQGNKAKKTVQPSTETMVKTSQDGSQNQVCKDSSSPASSNSSLKQMNVIKNHISNWDSVERIGRPEDLNRKLSFERDKEIHHTGHLKKSQSVESGLYQRLTEGDEDLGFSCDSSKSHNDSTTSISRKYHDANPIDQCKKNPNSESQIISGLANDVSLFSIGDETPSDKGAHESSDTPLSGELAGDSAERNSGPGTPSIMKSHSLPDIKAATLSPGKYAFKHATSMSRSFDDLQALGMKQKEVFINESDDQIREDQERENNMGKTEDNHNHMDRYFHDGFDSYMLSGSAKDWVMPITDDISDVKTLQGDSSVNCSGEFPKKDFKIKRIEDWVTDLQHCGPPLEETNELSESVDPLVDVNTINGVTAAVVDHKITPGMEAAKRYISSLSANATTAQLANHGLVVIPFMSAFVSLKMLNLAGNSIVRITAGALPRGLHTLNLSKNNISTIEGLRELTRLRVLDLSYNRILRIGHGLAYCSSLKELYLAGNKIGEVEGLHRLLKLSILDLRFNKISTAKCLGQLAANYNSLQAINLEGNPCQKNVGEEQLKKYLQGLLPHLVYYNRQPIKVSTLKDGADRAVRLGMNSQQFDRGLRVDRKATRKSSHGVVAARRSSSSSSSYAHRSQNVDSLKPSKGKQGHLPLPPIRTKVSTQNRYHFDAPSKGSGRSIRKSRSEGTLGAL* 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01323 688 MobiDBLite consensus disorder prediction 17 53 - -
Rops3g01323 688 Pfam Leucine-rich repeat 423 522 - -
Rops3g01323 688 Gene3D Ribonuclease Inhibitor 376 561 IPR032675 -
Rops3g01323 688 MobiDBLite consensus disorder prediction 119 154 - -
Rops3g01323 688 SUPERFAMILY Outer arm dynein light chain 1 413 575 - -
Rops3g01323 688 PANTHER NISCHARIN RELATED 230 638 - -
Rops3g01323 688 MobiDBLite consensus disorder prediction 168 214 - -
Rops3g01323 688 FunFam Protein phosphatase 1 regulatory subunit pprA 380 561 - -
Rops3g01323 688 ProSiteProfiles Leucine-rich repeat profile. 465 487 IPR001611 GO:0005515
Rops3g01323 688 ProSiteProfiles Leucine-rich repeat profile. 488 509 IPR001611 GO:0005515
Rops3g01323 688 ProSiteProfiles Leucine-rich repeat profile. 443 464 IPR001611 GO:0005515
Rops3g01323 688 SMART LRR_typ_2 463 486 IPR003591 -
Rops3g01323 688 SMART LRR_typ_2 508 530 IPR003591 -
Rops3g01323 688 SMART LRR_typ_2 419 442 IPR003591 -
Rops3g01323 688 SMART LRR_sd22_2 463 485 - -
Rops3g01323 688 SMART LRR_sd22_2 486 507 - -
Rops3g01323 688 SMART LRR_sd22_2 441 462 - -
Rops3g01323 688 SMART LRR_sd22_2 508 532 - -
Rops3g01323 688 MobiDBLite consensus disorder prediction 123 139 - -
Rops3g01323 688 MobiDBLite consensus disorder prediction 615 640 - -
Rops3g01323 688 MobiDBLite consensus disorder prediction 599 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01323 Rops-Chr3 19141099 19144945 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01323 - - gmx:100790061 956.436
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01323 3 19141099 19144945 Rops3g01323 3 19141099 19144945 ECH