Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01308 ATGGCTGGCATTGGCAAAGGAGTTGTTGACTTTGAAGACTTGCTTCCTGTGATGGCAAACAAGCTTGGTGGGGAGGGTCTAATGAAGGAGCTTTGCAATGGGTTCGAGTTGCTTATGGACAAAGATAAAGGGGTGATCACTTTGGAGAGTTTGAGGAGCAACGCTGCTTTATTGGGTCTACAAGACTTGAAGGAAGATGAGCTTGTTAGCATGATGAGGGAAGGTGATGGAGATGGAGATGGGGCACTTACCCAGATGGAGTTTTGTGTTTTGATGTTCAGGTTGAGCCCTGAGTTGATGGAAGAGTCTTGGTTTTGGCTTGAGGAGGCACTCCAACATGAACTCCACAACAACAACAAATCTTCTTTATAG 372 0.457 MAGIGKGVVDFEDLLPVMANKLGGEGLMKELCNGFELLMDKDKGVITLESLRSNAALLGLQDLKEDELVSMMREGDGDGDGALTQMEFCVLMFRLSPELMEESWFWLEEALQHELHNNNKSSL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01308 123 ProSiteProfiles EF-hand calcium-binding domain profile. 63 98 IPR002048 GO:0005509
Rops3g01308 123 Gene3D - 8 123 - -
Rops3g01308 123 SUPERFAMILY EF-hand 5 107 IPR011992 -
Rops3g01308 123 Pfam EF-hand domain pair 43 94 IPR002048 GO:0005509
Rops3g01308 123 SMART efh_1 67 95 IPR002048 GO:0005509
Rops3g01308 123 ProSitePatterns EF-hand calcium-binding domain. 76 88 IPR018247 -
Rops3g01308 123 PANTHER CALCIUM-BINDING PROTEIN KIC 9 117 IPR044205 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01308 Rops-Chr3 18857878 18858529 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01308 11 118 EF-hand Containing Proteins AT5G54490 63.303 3.22e-44 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01308 K24345 - gmx:100527206 211.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01308 3 18857878 18858529 Rops3g01308 3 18857878 18858529 ECH