Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01306 ATGGAAACAAGATCTGCAAAGCGCAAGAAGGTTGTTCAAACAGTAGTAAACAATACTGAAACAGCCATAGATCGAATTAGTGATCTACCTGATCATATCCTTCATAGTATTCTTTGTCTTCTTCCCATAAAATCTGTCGCACAGATGAGCATTCTTTCAAAAAGATGGAGATTTCTTTGGACAACTTTTCCTGACCTTGATCTCACAACCCTTGACTCATCTACGGTTTCTTCCAAAAATCCTGAAGTTTCAGACTTTGAAGAATATCCATGGGCTTCCACCCGAATGGATTTCATCAACCAAATTCTTTCTAATCGTGATAAACACTCAGATATCAGGATTCTTTGTTTTCGTGGCCAATTAAGTTTCTCAAAACTGAATAATTTGATTCGTAGTGCCATTAGGCATAATGTTAGAGAACTTGAAATTGAAGTAGACAAGGAAGTAAATACAAGTGATTACTTTAACTTACCCAGATGTGTTATTGGGAGTGAATCTTTAAGGGTTTTAAAATTGAAATTAAGATTTCGTTTGCCTTCATCATCAATCATGAGAAGTGGATTACAGTCTTTACAAACATTGTCTCTTTCCCAAGTCAATTTGTATAACCAGCCTTTTCTCTCTGATTTGTTCTCTCAGTCATCCTTTCCTCTTTTGAGAAATTTGCACTTGGATACGTGCTACGGACTAAAATACCTTCATGTTGGTTGCCGCGCTCTTGAAGATCTGAGTTTGGAAAAATGTTTTCAGCTACAAGGTTTGGATATCTGTTGTGCAAAACTTGAAAGAATGAGGGTAGAGAGTTGTTTTGATGCCTATGGTTACAAGAGCAGGGTAAGAATCAATGCACCAAGGCTTCAACATTTGTTCTGGCAATATAATGCTGTCACAGACAAGACTATTTTCCAGCATTCAAATTTATTGCAAGAGGCCTCCATTGATTTTTGTTCACTGAAGAATATAGATATTAGTATGGTTAAGCTTCGAAGTGCCAGTGATTTTTTGTCTGGACTATCTCATGTCAATTCCTTAACTCTTCAAAGCCAAACTATTATTGAGGAATGGAATATGGACTTATGGGACATGACTAGCACTGAGGCAGAGCAATATTGGGAATCTCAGATCCCAACTCTGAAGTCTTTTCTTCAACACTTGAAAGTGGTGAAAATTCATGGGTTTCTTGATTGTGAGAATGAAGTCACACTAGCAAAGTTTCTCCTCAAACATGGGAAGGCCTTGGAAGAAATAATATTTTGTGACACTAGAGATACTCTCAGGCCACAAAAAATAAGGTCCCAAATGATGGGATTTTCTTGGGCTTCTTCTAATGCAAAAGTATCGTTTCTGTAG 1350 0.3719 METRSAKRKKVVQTVVNNTETAIDRISDLPDHILHSILCLLPIKSVAQMSILSKRWRFLWTTFPDLDLTTLDSSTVSSKNPEVSDFEEYPWASTRMDFINQILSNRDKHSDIRILCFRGQLSFSKLNNLIRSAIRHNVRELEIEVDKEVNTSDYFNLPRCVIGSESLRVLKLKLRFRLPSSSIMRSGLQSLQTLSLSQVNLYNQPFLSDLFSQSSFPLLRNLHLDTCYGLKYLHVGCRALEDLSLEKCFQLQGLDICCAKLERMRVESCFDAYGYKSRVRINAPRLQHLFWQYNAVTDKTIFQHSNLLQEASIDFCSLKNIDISMVKLRSASDFLSGLSHVNSLTLQSQTIIEEWNMDLWDMTSTEAEQYWESQIPTLKSFLQHLKVVKIHGFLDCENEVTLAKFLLKHGKALEEIIFCDTRDTLRPQKIRSQMMGFSWASSNAKVSFL* 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01306 449 ProSiteProfiles F-box domain profile. 23 71 IPR001810 GO:0005515
Rops3g01306 449 Gene3D - 10 67 - -
Rops3g01306 449 PANTHER F-BOX PROTEIN-LIKE 24 419 - -
Rops3g01306 449 SUPERFAMILY F-box domain 19 69 IPR036047 GO:0005515
Rops3g01306 449 Pfam FBD 379 417 IPR006566 -
Rops3g01306 449 SMART 9598neu4hmm 379 449 IPR006566 -
Rops3g01306 449 SUPERFAMILY L domain-like 157 391 - -
Rops3g01306 449 Pfam F-box domain 26 61 IPR001810 GO:0005515
Rops3g01306 449 CDD F-box_AtFBL13-like 26 61 - -
Rops3g01306 449 Gene3D Ribonuclease Inhibitor 109 422 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01306 Rops-Chr3 18806026 18807827 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01306 8 245 EF-hand Containing Proteins AT5G41840 25.200 1.05e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01306 - - adu:107477862 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01306 3 18806026 18807827 Rops3g01306 3 18806026 18807827 ECH