Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01283 ATGGAAGGTTACTGCAATCTTGAAGTTGATGTAAATGGAGAAGAGACCTTCATGGTGGATAAGACGATTATTACTCAGTACTCAAGCAAATTTGCTAAATTATTTGGAAAATCTAGTGGTGGCACTGGAAAGCTTAAAGTAATATTCCATGATTTTCCAGGAGGTGCTGAAGGTTTTGAGCTAATGTTAAGATTCGGTTATAACAATGGAACAACTGATATAAGTCCCTCCAATTTGTTACTTGCACGTTGTGCTGCTGAATACATGGAAATGAATGAATCTGTAGCTGGTGTTTCTAACTTATTGGATCAAACAGAAAAATCACTTCAAGAGATTAGATATTGGACTTGGTCAGACCTCTTGATTGCTTTGAAGCAGTGCCAGAATTCACTAGTTGAAGATTCTTCTGTGATGCTAGAGAGATGCTTGGATACTGTTGTGGGGAGATTGGTTTTGGCCAGTGAAGCAAGTCCATGTCCATCAACTTGTTCCACTGACAGTTCCGGGATTCGGTTTTCATGTGACTCTAAAAGTACTGAGAGTATAAAGACCAATTTCTCTCGTTCAACATGGTGGTTTGAAGATCTCCTATTTTTGAGTCCCTTGTTGGTTGCAATGTTGGTAAAGTCAATGCTTTCGCGTAAGTTGGACCATGGTGTTATTAGCAGGTTTCTTCTCTTTTATCAGAAGGCAAAATTTTCCACTGCTACTATTGATGAGAAGAGCAAAATCATGGAAACGGTCATAGATATGCATTATTATATGGATCAGAGTTCTGTTTCTTGCAAGACTTTATTTGGGATTCTTCGGGTTACTTTGGGTTTGAACATAAGCAAATGTAGCAGGAATAAGTTGGAGAATATGATTGGTTTCCACTTGGATCAAGCAACCTTGGATAATTTGCTTGTTCCTTCTCCCTATGGAATAAGCTACTTATATGATGTGAACCTTGTTCTGAGATTCTTGAAAGCATTCCTTCGTCAAGGAACTGATCTAGTCACTCCCATTCAGATGAGGAAAGTTGCTAACTTGATAGATTTGTATATAGCAGAAATAGCCCCTGATCCTTATTTAAAAACTTCAAAGTTCTTGGCTCTAGCCACAGCACTTCCAGATTCTGCAAGAGTTTCATGTGATAAGCTCTACCATGCAATGGACATGTATCTTGAGGTACACACTAAATTATCACCTGAAGAAAGGGTGAAGATGTGCTGTGGTTTAAATTATGAGAAGCTTTCACCTCAAGTTTGCCTACACCTTTCTCAGAACACAAAGTTTCCTTCAAACTCTGCAGTTCAGGCTCTCATCTCTCAACAATCTAAGCTAAAAAATTTACTCCATGTTACTCCCAGCTCAACTTCATACAGTAATTCCCCTTGCAGTTCCAGTGATGCTGCTCAAAAGGGAAAGAAAGACAAAACTAATGAACAAGTTATGTTGTATTCTGGCACTTTTGATCTTTCAGCTGATAATGAGAAACTCAGAGCACATTTGCAAGGAATGCAATGGAGGGTTATGGAATTAGAGAAATTCTGTAGGAAAATGCAAACCCAAATGGCAAAGATGACAAAATCAAAAGCATCAGGAAATAGTTATTCAAAATCTTTGCCCAAGCTCTGCTCATGA 1626 0.3844 MEGYCNLEVDVNGEETFMVDKTIITQYSSKFAKLFGKSSGGTGKLKVIFHDFPGGAEGFELMLRFGYNNGTTDISPSNLLLARCAAEYMEMNESVAGVSNLLDQTEKSLQEIRYWTWSDLLIALKQCQNSLVEDSSVMLERCLDTVVGRLVLASEASPCPSTCSTDSSGIRFSCDSKSTESIKTNFSRSTWWFEDLLFLSPLLVAMLVKSMLSRKLDHGVISRFLLFYQKAKFSTATIDEKSKIMETVIDMHYYMDQSSVSCKTLFGILRVTLGLNISKCSRNKLENMIGFHLDQATLDNLLVPSPYGISYLYDVNLVLRFLKAFLRQGTDLVTPIQMRKVANLIDLYIAEIAPDPYLKTSKFLALATALPDSARVSCDKLYHAMDMYLEVHTKLSPEERVKMCCGLNYEKLSPQVCLHLSQNTKFPSNSAVQALISQQSKLKNLLHVTPSSTSYSNSPCSSSDAAQKGKKDKTNEQVMLYSGTFDLSADNEKLRAHLQGMQWRVMELEKFCRKMQTQMAKMTKSKASGNSYSKSLPKLCS* 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01283 541 SMART BTB_4 5 106 IPR000210 GO:0005515
Rops3g01283 541 MobiDBLite consensus disorder prediction 522 541 - -
Rops3g01283 541 MobiDBLite consensus disorder prediction 450 473 - -
Rops3g01283 541 ProSiteProfiles BTB domain profile. 5 69 IPR000210 GO:0005515
Rops3g01283 541 Pfam NPH3 family 190 417 IPR027356 -
Rops3g01283 541 ProSiteProfiles NPH3 domain profile. 190 441 IPR027356 -
Rops3g01283 541 Gene3D Potassium Channel Kv1.1; Chain A 1 118 IPR011333 -
Rops3g01283 541 PANTHER OS12G0117600 PROTEIN 7 524 IPR043454 -
Rops3g01283 541 SUPERFAMILY POZ domain 4 98 IPR011333 -
Rops3g01283 541 MobiDBLite consensus disorder prediction 450 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01283 Rops-Chr3 18568136 18571829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01283 17 521 EF-hand Containing Proteins AT3G44820 27.240 9.36e-54 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01283 - - gmx:100784792 897.886