Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01272 ATGCCTCCTCCGACAACAACACTAACACAACCATTCAAATCCTTCCTCTTCATCCTCTCTTTGCTCTTAAACCTTTACCTTCTTCTCATCCTGTGGGCCCCTTTATATGTCCCCACCACCACCACTACAGTCGTTTCTCGCTTCTCCGCCACCACGCGCCGCCACATTCTCTTCGCCATCGCCTCCTCCTCCCTCTCCTGGCCACATCGCCAACCTTACCTCCGTCTCTGGTATTCCCCAAACACCACACGCGCCTTTGCCTTCCTTGACTCTCCTCCTCTCAACTCCTCTCCCTCCTTGCCGCCGGTGATTATCTCCGGCGACACTTCCCGGTTCCAATACACCTTCCGGGGAGGTCTCCGGTCGGCGATACGTGTCGCTAGGGTTGTGAAGGAGGTGGTTGATCGGAATGAGACCGATGTGCGGTGGTTCGTGTTCGGCGACGACGACACCGTTTTCTTCGTTGATAACGTTGTGAGGACTCTTTCCAAATACGATCATGATCGGTGGTTTTATATTGGGAGCAATTCTGAGAGTTATGAGCAGAATGTGAAGTATTCGTTTGAGATGGCGTTTGGTGGAGGGGGTTTTGCTATTAGCTATTCCCTTGCTAGGGTTTTAGCTACGGTTTTGGATACGTGTTTGAGGAGGTATGGCCATTTGTATGGTAGTGATTCAAGGATTTATTCTTGTGTTGCTGAGCTTGGTGTAGGGTTAACACATGAACCTGGTTTTCATCAGTTAGATATGCGGGGTAATTTATTTGGGATGTTGGCTGCACATCCATTATCTCCTTTGTTGTCCCTTCATCACTTGGAAGTGGTGGAGCCTCTCTTTCCTACCATGAACAGAACACGAGCTTTGGCACATCTTTTTGCGGCTGCAAATGTTGATCCTGCCAGGATCCTGCAGCAAACTGTCTGCTATGATCGATCAAATTCTTTAACTTTCTCGGTTTCTTGGGGTTATGCTATCCAGGTTTATCAAGGAAATGAACTTCTACCTGATCTCCTTTCAGTGCAGAGAACTTTTGTTCCATGGAGGAGGGGTAGCAAAGTTGATGCCAATTTTATGTTTAACACTAGAGACTATCCTAGAGATCCTTGTAAAAGGCCTTCTGTATTTTTCTTGAGAAGTGTTAAATCTGATAAAAAGGGCATTTGGAGCAATTACACTAGGCATGTAGTCGGTAATTGCTATGAATCAGATGTTACACAGCTGAAGGAGATCATAGTTTTCTCTAGGAAGCTGGATCTTAGTATTGAACAGATGAAAGCCCCCCGTCGTCAGTGCTGCAAAGTTTTGCCATCTTCTAATCAATCAATCAGTATTCATATTAGACAGTGTGAAATAGATGAACTGATCGCCATGCAATCATAG 1380 0.4623 MPPPTTTLTQPFKSFLFILSLLLNLYLLLILWAPLYVPTTTTTVVSRFSATTRRHILFAIASSSLSWPHRQPYLRLWYSPNTTRAFAFLDSPPLNSSPSLPPVIISGDTSRFQYTFRGGLRSAIRVARVVKEVVDRNETDVRWFVFGDDDTVFFVDNVVRTLSKYDHDRWFYIGSNSESYEQNVKYSFEMAFGGGGFAISYSLARVLATVLDTCLRRYGHLYGSDSRIYSCVAELGVGLTHEPGFHQLDMRGNLFGMLAAHPLSPLLSLHHLEVVEPLFPTMNRTRALAHLFAAANVDPARILQQTVCYDRSNSLTFSVSWGYAIQVYQGNELLPDLLSVQRTFVPWRRGSKVDANFMFNTRDYPRDPCKRPSVFFLRSVKSDKKGIWSNYTRHVVGNCYESDVTQLKEIIVFSRKLDLSIEQMKAPRRQCCKVLPSSNQSISIHIRQCEIDELIAMQS* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01272 459 FunFam Fringe-related protein 45 284 - -
Rops3g01272 459 Pfam Protein of unknown function, DUF604 182 432 IPR006740 -
Rops3g01272 459 Gene3D - 45 301 - -
Rops3g01272 459 PANTHER FRINGE-RELATED 18 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01272 Rops-Chr3 18327880 18331197 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01272 50 459 Glycosyltransferase AT4G15240 66.505 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01272 - - gmx:100813277 685.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01272 3 18327880 18331197 Rops3g01272 3 18327880 18331197 ECH