Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01246 ATGTCCCAGCTTGGCTGGAAAGTTGGCCACTCCTTCACCCTCCGCCGACGGATTCACCACCGTGTTTCAATGCTCCGGCGATGCTTCCTCCGTGTCCTCCACCGCTTACTCTGCTCCGGAATGAAGCCCCCAAATGCCACGTATAGTATGCTGCAGCAGCAACATGCAGCATTGCCCTCTCCGCCGCCGCCTCCGGCGTCGGATCCCGCCGTGGAGCCTGGCCGTGAAGAGGAGCAGGTTGCGGCACCACCTGTGTTTCACACCCATGATTTTGATTCTGATTTGGTTTCCCTGAAAATCAGCTTGTTGGGTGATTGCCAAATCGGAAAAACCAGCTTTTTGGTGAAATATGTAGGGGATGAAAAAGAGCAAGAAGGGAAACAGAGGAAAGGGCTAAATCAGATGGACAAAACTTTGGTTGTGAGAGGGGCACGTATATCATATTGTCTCTGGGAAGTACAAGGTGATCGAAAATCAGAAGACCAAATTCCAATGGCTTGTAAGGACTCCGTGGCAATTTTGATCATGTTTGATCTAACAAGTCGATGCACATTAAACAGTGTTCTGGGATGGTACAAAGAAGCTAGGAAATGGAATCAGACAGCAATTCCAGTGTTGATAGGAACCAAGTTTGATGATTTCATTCAGCTCCCCATTGATATGCAATGGACCATCGCCAGTGAGGCAAGAACATATGCAAAGGCCATCAATGCCACGTTGTTCTTTTCAAGTGCAACCTATAATATCAACGTGAACAAGATCTTCAAGTTCATCACTGCAAAACTCTTTGACCTACCATGGACATTGGAAAGGAATCTAACTGTTGGGGAGCCCATCATTGATTTCTAA 849 0.4735 MSQLGWKVGHSFTLRRRIHHRVSMLRRCFLRVLHRLLCSGMKPPNATYSMLQQQHAALPSPPPPPASDPAVEPGREEEQVAAPPVFHTHDFDSDLVSLKISLLGDCQIGKTSFLVKYVGDEKEQEGKQRKGLNQMDKTLVVRGARISYCLWEVQGDRKSEDQIPMACKDSVAILIMFDLTSRCTLNSVLGWYKEARKWNQTAIPVLIGTKFDDFIQLPIDMQWTIASEARTYAKAINATLFFSSATYNINVNKIFKFITAKLFDLPWTLERNLTVGEPIIDF* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01246 282 PANTHER - 95 269 - -
Rops3g01246 282 SMART rab_sub_5 98 265 - -
Rops3g01246 282 SMART rho_sub_3 100 264 IPR001806 GO:0003924|GO:0005525
Rops3g01246 282 MobiDBLite consensus disorder prediction 52 79 - -
Rops3g01246 282 Pfam Ras family 99 262 IPR001806 GO:0003924|GO:0005525
Rops3g01246 282 CDD Spg1 98 279 IPR017231 -
Rops3g01246 282 Gene3D - 91 271 IPR027417 -
Rops3g01246 282 FunFam Septum-promoting GTP-binding protein 1 88 272 - -
Rops3g01246 282 ProSiteProfiles small GTPase Rab1 family profile. 92 282 - -
Rops3g01246 282 PRINTS Transforming protein P21 ras signature 139 161 - -
Rops3g01246 282 PRINTS Transforming protein P21 ras signature 200 213 - -
Rops3g01246 282 PRINTS Transforming protein P21 ras signature 98 119 - -
Rops3g01246 282 PRINTS Transforming protein P21 ras signature 240 262 - -
Rops3g01246 282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 98 274 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01246 Rops-Chr3 17871689 17874661 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01246 K07976 - gmx:100780638 444.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01246 3 17871689 17874661 Rops3g01246 3 17871689 17874661 ECH