Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01236 ATGGCAGAACCCAAAGTTAAATACGATCGCCAACTCAGAATATGGGGTGACCAAGGACAGGCTGCACTTGAGAAAGCTAGTATTTGCTTACTTAACTGTGGTCCTACTGGTTCTGAAACACTGAAGAATCTTGTTCTTGGTGGGGTTGGAAGCATCACTGTAGTCGATGGATCTAAAGTTGAAGTGGGCGACCTTGGAAACAATTTTTTGGTGGATGAATCAAGCCTTGGGCAGTCAAAGGCAAAATGTGTATGCTCATTTCTTCAAGAGCTGAATGATGCAGTTAAAGCAAAATATGTAGAAGAGTTTCCAGAAGCATTGATTGAGACAAATCCATCATTCTTTTCTCAATTCACTTTGGTTGTTGCCACACAGCTGGTGGAAAATTCAATGATAAAGCTTGACCGCATCTGCTGGGAGGCGAATGTTATGTTGATCTTTGCCCGCTCCTATGGCCTTACAGGGTTTGTTCGAATTAGTTTGAAGGAACATACTGTGATTGAGTCTAAGCCGGAGCATTTTCTGGATGATCTCCGGTTAAATAATCCTTGGCCTGAACTCAAGAGGTTTGCAGAGGGCTTTGACTTGAATGTGCAAGATCCTGTGGCTCATAAGCACATACCATATGTTGTCATTCTTGTCAAGTTGGCTGATGAGTGGACCAAAAGCCATGATGGTAGACTTCCATCGACCAGAGAAGAAAAAAAGGAGTTCAAGGAGCTTCTTAAGGCTGGGATGGCTGCACAAGATGAAGATAATTATAAAGAAGCTATTGAATCCTCATTCAAAGTATTTGCTTCCCGAGGAATTAGTTCGGAGTTGCAACAGATACTAAATGACAGTTCTGCTGAAGTGGACTCTGGTTCATCAGATTTTTGGGTGTTGGTGGCGGCTCTAAAGGATTTTGTTACAAATGAAGGTGGTGGGGAAGCACCACTTGAAGGATCTATACCAGATATGACTTCTTCTACTGAGCAATATGTGAATTTGCAGAATATCTATCAGGCTAAGGCTGAGGCTGACTTTCTTGTAATAGAACAACTGGTGAGAAGTACTTTGAAGAAAATTGGTAGAGATTCAAATAGCATTCCAAGGGCGACGATTAAAAGCTTCTGTAAAAATGCAAGAAAACTCAAAGTATGCAGGTACCGTCCAATTGAAGATGAGTTTAATTCTCCAAACCTACCCGAGTTACAGAAGTACCTAACTGATGAGGATTACAGCATTGCCGTGGGAATTTATATTTTGCTTCGCGCTGTTGACCGCTTTGCTGCTAATTACAACAGTTTTCCTGGACAGTTTGACAGTGCAATGGATGAGGATATACCTCGATTAAAGAGCACAGCGATTGGCCTACTTAGTGACTTAGGATGCAACGGCGCCATTTTGGCCGAGGACCTGATCAATGAGATGTGTCGATTTGGTGCTGCAGAGCTTCATGCTGTTGGTGCTTTGGTTGGAGGAATTGCATCACAAGAAGTGATCAAGCTCATAACAAGGCAATTTGTACCGATGTCCGGAACCTACATATTCAACGGCATTGACCACAAGTCGCAGCTGTTGACACTGTAA 1572 0.4262 MAEPKVKYDRQLRIWGDQGQAALEKASICLLNCGPTGSETLKNLVLGGVGSITVVDGSKVEVGDLGNNFLVDESSLGQSKAKCVCSFLQELNDAVKAKYVEEFPEALIETNPSFFSQFTLVVATQLVENSMIKLDRICWEANVMLIFARSYGLTGFVRISLKEHTVIESKPEHFLDDLRLNNPWPELKRFAEGFDLNVQDPVAHKHIPYVVILVKLADEWTKSHDGRLPSTREEKKEFKELLKAGMAAQDEDNYKEAIESSFKVFASRGISSELQQILNDSSAEVDSGSSDFWVLVAALKDFVTNEGGGEAPLEGSIPDMTSSTEQYVNLQNIYQAKAEADFLVIEQLVRSTLKKIGRDSNSIPRATIKSFCKNARKLKVCRYRPIEDEFNSPNLPELQKYLTDEDYSIAVGIYILLRAVDRFAANYNSFPGQFDSAMDEDIPRLKSTAIGLLSDLGCNGAILAEDLINEMCRFGAAELHAVGALVGGIASQEVIKLITRQFVPMSGTYIFNGIDHKSQLLTL* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01236 523 CDD APPBP1_RUB 7 521 - -
Rops3g01236 523 PIRSF APP-BP1 1 523 IPR030667 GO:0019781|GO:0045116
Rops3g01236 523 Gene3D - 351 523 - -
Rops3g01236 523 Gene3D - 2 279 - -
Rops3g01236 523 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 2 505 IPR045886 -
Rops3g01236 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 1 274 - -
Rops3g01236 523 FunFam NEDD8-activating enzyme E1 regulatory subunit 361 523 - -
Rops3g01236 523 Pfam ThiF family 8 501 IPR000594 -
Rops3g01236 523 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 7 520 IPR035985 GO:0008641
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01236 Rops-Chr3 17538258 17548532 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01236 8 157 EF-hand Containing Proteins AT2G30110 30.263 2.41e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01236 K04532 - gmx:100793799 956.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01236 3 17538258 17548532 Rops3g01236 3 17538258 17548532 ECH