Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01234 ATGAATAACGTCTACAAAACGCGCGTGGCATTCGCAATCGCCACTTTAGCAGCTGCTACTATCATCTCTATCTTCTTCACCGCACGACGACGTCGTTTGAGGTGTCATAAGCAGCACGAGTCCCCTTCCAGTTCCTGCTATTCGCATTCCGAAACGAAACCACAGTGCGCATTTAAGAAAGTCTTAGCTGACAATTCCTACGCGCCGTTTAAGCATTTAAACCTCAACGACTCAACTAGTAACGAGATTGCTTCAAATTTGCATCCATTTGAAGCAGAGATTACAGCATTGTTAAAAAATCCTCAGCCTGAAATTGAACTTAGTACTGAGATATTGGACTTGGAAATGAATGATTCGTATGTTTGGGTAGATACAGTGATGCAATTAAAGGAACTGGTCGATGTATTGAGCAAAGAGAGGTTCTTTGCTGTGGACACAGAACAACATAGCTTACGCTCTTTTCTAGGCTTTACAGCATTAGTTCAGATTTCTACACGGCAGAAAGATTATTTGATTGACACAATTGCCCTGCATGATTCTATGGGGATTCTTCGCCCAGTTTTTGCCAATCCTTCAATTTGTAAAGTTTTCCATGGGGCTGACAATGACGTTCTCTGGCTACAGAGGGACTTCCATATCTATGTTGTTAATCTATTTGATACTTCAAAGGCATGCGAGGTGCTGTCAAAACCACAGAAATCACTTGCTTATTTGCTCGAAACATACTGTAGTGTGACAACAAATAAATTATTACAGCGTGAAGACTGGAGACAGCGCCCTCTCTCAGCAGAAATGGTGCATTATGCACGAACAGATGCACACTATCTGTTGTATATTGCTAACTGTCTGATCGTTGAACTCAAACAAATGGACAACGAAAACTCTTGTTCCGATGACAAATTCCATTTTGTTCTCGAGGCCAGTCGGCGTTCAAACATGATTTGTTTACAACTTTTCACAAAGGAGTTTGAAGCTTCTCCTGGAGAATCTGCTGCATTATCATTATTTTCACGTCATGTTAGCAGTCAAGGCTTTCCTTCAAATTCCAATGAAACCCAGTTTCATTATACGGTGAGGCAGCTGTGTGCATGGAGAGATTTGATGGCTCGTATTCATGACGAGAGCTTAAAATATGTACTGTCAGACCAGGCAATTGTTGCTTTGGCAAGTCAGCCTCCAGCAAGTCACTCTGAAATATACAACAACATTGCTCGGAGTGATATCAATGTAGAAATGGGTCTCAACTCTTCCATCCCTTCCCCATCTCCTGTTGTTTGCAGCCACCTGAGTGATATCTATCATCTGCTTGCAAACGAGTTGGCGAACGATGGTGATATTTATTCAATGATTCTTCAAAAGTGTATAGGTCAAAATGGGAGTTGTCAACTTTCTATATTCAATTATGCTTTGTTGGTTAACAGTAACCTGAGACCTACTTTAGCCTATAAACACTCAGGCCTAAAAAATCCTAAACAAATTTCCCGGAAGGCTTCTCGAGATTTGTTTGTTCAAAAATTCTCTTGCAAATCTCCTGTTTATCACAATTGCCGAATATTTGCTAATGATGGGAGGCTGCTTTGTTATTGTGATCGGAAGAAGCTTGAATGGTACATTAGCCGGGATCTTGCAAAACTTCTTGATGAGGACCCCCCAGCAATAATGCTTCTTTTTGAACCCAAAGGCCGCCCAGAGGATGAAGGCAATGATTTTTATATCCAGAGTAAGAAAAATATATGTGTTGGGTGTGGCGAAGGCAATCACTACTTACGGTATCGAATAATCCCATCATGTTACAGAATGCATTTCCCTGAGCATTTGAAAAGCCATCGTTCTCATGATATTGTCCTACTTTGTGTGGATTGCCATGAAGTTGCCCATGCTGCTGCAGAGAAGTATAAAAGAAAAATAGCTGCTGAATTTGGAATTTCTCTTTATGTTCGAAGGGTAATTCATGCAGCGCAAGAGACTGAAAAACAGAATGAGGAGGGAGGTGTATCTCCATTACAATTACGAACAGCTGCTATGGCTCTTATACGACATGGACCGAGAATGCCTTTCAATCGCCGCAAAGAACTGATTGAGATTGTAAAGAGATATTATGGAGGAAGGGAGATATCCAAGGAAGATCTAGAAAGAGCTTTGCAAGTTGGGATGAGTCCTCATGGGAGAAGACGATTTGAGAAGAAGAGAGGGTTTTCTTTTAAACATTCTGTAGGGAGTGATGCTGCAGTACCTCAAGAGGAGAATCATGCCGGCTGTGCACCCAGAATGAATGAGGACACATTGAATGTTGATGCTCTTGATGGTTCATATACAAATGAAGAGACAAAAAGTGAAGTGGAAAGAGAACTTTTTATGGAAAAAGATGATTTACGAAACCCTTCAATAGCTTCTGATCTTGCAGTGGATGGAGCTACTTCAAATGGAAATACCATCTTAGTTAAAACTACAGATCATAATGAAAGCAGTAACTCTGATGTGAACGTTGATAGTAGTCCGAGCAGAAGGCTAGCAAATGGAGTTGGTGACTTGTCTTATACCCCCAAAGATGAAGAATCGACACAAGCTAAACATAATTCGAAACTCTCACTCTTGGGACATGGACCACATGGGAAACAAGTTGTAGAGCATTTGCTGAAGGAGTATGGTGAAGATGGCATTCGAGAGTTTTGTCAAAGATGGAGACAAGTATTTGTGGATGCTGTAAATCCACGTTTTCTTCCTGCTGGTTGGGATGTAAAACACAGTGGAAGAAGGGACTTCGGCGAGTTCAGTGTATACAATCCTGACAAAAGAGTGGCTGCTGCTAGTACCTAG 2817 0.4129 MNNVYKTRVAFAIATLAAATIISIFFTARRRRLRCHKQHESPSSSCYSHSETKPQCAFKKVLADNSYAPFKHLNLNDSTSNEIASNLHPFEAEITALLKNPQPEIELSTEILDLEMNDSYVWVDTVMQLKELVDVLSKERFFAVDTEQHSLRSFLGFTALVQISTRQKDYLIDTIALHDSMGILRPVFANPSICKVFHGADNDVLWLQRDFHIYVVNLFDTSKACEVLSKPQKSLAYLLETYCSVTTNKLLQREDWRQRPLSAEMVHYARTDAHYLLYIANCLIVELKQMDNENSCSDDKFHFVLEASRRSNMICLQLFTKEFEASPGESAALSLFSRHVSSQGFPSNSNETQFHYTVRQLCAWRDLMARIHDESLKYVLSDQAIVALASQPPASHSEIYNNIARSDINVEMGLNSSIPSPSPVVCSHLSDIYHLLANELANDGDIYSMILQKCIGQNGSCQLSIFNYALLVNSNLRPTLAYKHSGLKNPKQISRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEWYISRDLAKLLDEDPPAIMLLFEPKGRPEDEGNDFYIQSKKNICVGCGEGNHYLRYRIIPSCYRMHFPEHLKSHRSHDIVLLCVDCHEVAHAAAEKYKRKIAAEFGISLYVRRVIHAAQETEKQNEEGGVSPLQLRTAAMALIRHGPRMPFNRRKELIEIVKRYYGGREISKEDLERALQVGMSPHGRRRFEKKRGFSFKHSVGSDAAVPQEENHAGCAPRMNEDTLNVDALDGSYTNEETKSEVERELFMEKDDLRNPSIASDLAVDGATSNGNTILVKTTDHNESSNSDVNVDSSPSRRLANGVGDLSYTPKDEESTQAKHNSKLSLLGHGPHGKQVVEHLLKEYGEDGIREFCQRWRQVFVDAVNPRFLPAGWDVKHSGRRDFGEFSVYNPDKRVAAAST* 939
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01234 938 Pfam 3'-5' exonuclease 120 285 IPR002562 GO:0003676|GO:0006139|GO:0008408
Rops3g01234 938 PANTHER POLYMYOSITIS/SCLERODERMA AUTOANTIGEN-RELATED 40 932 IPR045092 GO:0000175|GO:0000467
Rops3g01234 938 FunFam Polynucleotidyl transferase ribonuclease H fold protein with HRDC domain 52 325 - -
Rops3g01234 938 Gene3D - 34 324 IPR036397 GO:0003676
Rops3g01234 938 MobiDBLite consensus disorder prediction 814 835 - -
Rops3g01234 938 MobiDBLite consensus disorder prediction 814 867 - -
Rops3g01234 938 SUPERFAMILY Ribonuclease H-like 53 290 IPR012337 -
Rops3g01234 938 Pfam HRDC domain 358 398 IPR002121 GO:0003676
Rops3g01234 938 Gene3D HRDC domain 342 445 IPR044876 -
Rops3g01234 938 CDD Rrp6p_like_exo 116 309 - -
Rops3g01234 938 SMART 35exoneu6 120 288 IPR002562 GO:0003676|GO:0006139|GO:0008408
Rops3g01234 938 SUPERFAMILY HRDC-like 354 438 IPR010997 GO:0000166|GO:0044237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01234 Rops-Chr3 17523724 17534059 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01234 K12951 - gmx:100791485 1465.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01234 3 17523724 17534059 Rops3g01234 3 17523724 17534059 ECH