Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01227 ATGCCTTTGTTGATTCTCTATGGCTCTGCCTCCTTCTCCTCTCCGGAAGACACCGAAAGGAACAGTGCTGGTGCAAGCAGCAACTCTACATTGGAGCTCCTTTCTCGATGTCGAAAAAGCACCCAACAAGTTGGGTTTGGTCCAATTTTAGCTAAGTTTAATGCAAACAATGTAGAATATTCCATTAGAGCTTTTCCTCTTGGTGGGTTTGTGGGGTTTCCTGATAATGATCCAGAGAGTGATATTCCTGTTGATGATGAAAATTTGCTTAAGAATAGACCAATATTGGATAGAATCATTGTGGTTTCAGCTGGTGTTATTGCCAATATAGTTTTTGCATTTGTCATTATCTTTGTTCAAATCCTAGCTGTTGGTTTTCCTGTGCAAGAGGTCTTTCCTGGGGTTAATGTCCCTGAAGTTAGACCCTTGTCAGCTGCTTCTAGAGATGGTTTGCTTGCTGGGGATGTGATTCTTGAAGTGAATGGAAGTGAGTTTCCTAAACCAGGTCCTAATGCTGTTTCTGAAGTTGTTGATGTCATCAAGAGGAACCCCAAGAGATATGTTTTGCTCAAGGTTAAGAGAGGGGAGCAAAACTTTGAAATAGGGGTCACCCCTGATGAGAATTATGATGGAACTGGTAAAATTGGAGTTCAGTTATCACCTAATGTAAAGATAGCTAAGGTTAGACCAAAGAATCTGGTGGAAGCTATGACCTTTACTGTAAAAGAATTCTGGGGTCTATCGTCTAATGTTTTAGATGGCTTAAGGCAGACATTTTTGAATTTTTCCCAGTCAGCTAGTAAGGTTTCAGGTCCTGTAGCCATTATTGCTGTTGGTGCGGAAGTTGCTCGGTCAAACATTGATGGTCTCTACCAATTTGCCGCCATACTCAATATTAACCTCGCGGTTATAAACCTTCTTCCTTTGCCTGCTTTAGATGGGGGTTCATTGGCATTGATTCTTATTGAGGCTGCTAGGGGTGGGAGAAAACTACCTCTGGAAGTGGAGCAACGGATCATGTCATCAGGAATTATGCTTGTTGTACTTCTGGGGTTATACCTTGTTGTTCGCGATACCTTAAACCTTGATTTTATCAAAGATATGTTGTAA 1110 0.4144 MPLLILYGSASFSSPEDTERNSAGASSNSTLELLSRCRKSTQQVGFGPILAKFNANNVEYSIRAFPLGGFVGFPDNDPESDIPVDDENLLKNRPILDRIIVVSAGVIANIVFAFVIIFVQILAVGFPVQEVFPGVNVPEVRPLSAASRDGLLAGDVILEVNGSEFPKPGPNAVSEVVDVIKRNPKRYVLLKVKRGEQNFEIGVTPDENYDGTGKIGVQLSPNVKIAKVRPKNLVEAMTFTVKEFWGLSSNVLDGLRQTFLNFSQSASKVSGPVAIIAVGAEVARSNIDGLYQFAAILNINLAVINLLPLPALDGGSLALILIEAARGGRKLPLEVEQRIMSSGIMLVVLLGLYLVVRDTLNLDFIKDML* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01227 369 NCBIfam RIP metalloprotease RseP 140 362 IPR004387 GO:0004222|GO:0006508|GO:0016020
Rops3g01227 369 PANTHER REGULATOR OF SIGMA-E PROTEASE RSEP 43 365 IPR004387 GO:0004222|GO:0006508|GO:0016020
Rops3g01227 369 ProSiteProfiles PDZ domain profile. 124 195 IPR001478 GO:0005515
Rops3g01227 369 Gene3D - 127 220 IPR036034 GO:0005515
Rops3g01227 369 CDD PDZ_metalloprotease 122 205 - -
Rops3g01227 369 SMART pdz_new 122 196 IPR001478 GO:0005515
Rops3g01227 369 Pfam Peptidase family M50 41 350 IPR008915 GO:0006508
Rops3g01227 369 Pfam PDZ domain 139 194 IPR041489 -
Rops3g01227 369 SUPERFAMILY PDZ domain-like 127 206 IPR036034 GO:0005515
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01227 - - lang:109351773 540.036
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01227 3 17421592 17431834 Rops3g01227 3 17421592 17431834 ECH