Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01169 ATGGGTGTGCCATCGTTTTATAGATGGTTGGTTAACAAATATCCAAAGGTGGTTGAAGATGTAAGCACCGCCATGCCAAATCCAAATGGCTTGGAATATGATAACTTTTATCTTGACATGAATTCCATAATCCACCCTTGCTTTCACCCTGATGATATCAACGTAATTTTTAATGTTATTCAGAGTTCACAGCTGACAACGTTCGAAGATGTGTTTAAGAATATCTTTGAACACATTGATCAGCTTGTTAGCATTGTTAGGCCTCGCAAGCTTTTGTACATGGCTATAGATGGAGTAGTCCCACGTGCCAAATTGAATCAGCAAAGAGCTAGACGTTTTCGAACTGCAAAGGACAATGAAATACGTGAAGCTGAAGAAGAGAGGTTGCGAAATCAATTTACAATGGAAGGAAAACAAGTTCTTCCTAAACAAGAATCTGAATTGTCAGATCCTAATATTATAACACCAGGCACTGAGTTCATGCATGAATTGTCAAAGGCCCTTAAAGCCTATATCTCTTCAAGAATAGCAAGTAATTCGTTATGGAAGGATATTATGGTAATTCTCTCTGATGCTAATGTTCCTGGAGAAGGAGAGCATAAAATCATGTCATACATACGCAAACAACGTAGTCTTCATGGATATGATCCAAACACCAGCCACTGCTTATATGGCTCTGATGCGGATCTTATAATGCTTGGAATGGCAAGTCATGAACCCCATTTTTCAATATTAAGAGAGGATGTCATTCCAGAGCATCAGCAACAAATTGCTGCTAAGCCTTTCAAGTTTTTGCATATTTGGTTATTGAGGGAATATCTTGAGTTAGACATGAAGATACAAGATCCTCCAAAAAATTTCAGCATTGATTTTGAGAGGATTATTGATGATTTCATCTTCATGTGCTTTTTTGCTGGAAATGATTTTCTGCCCCACATGCCATCTTTGGGAATTCATGAGGGGGCTATTGATTTACTAATGACTGTTTACAAGAAACAATTCAGTAAAATTGGAGGATATCTTGTGGACATCAATAAGGTTGGGGAAAAACATGCTGCTTTCTTGAAGTTATCAAGAGTTGAAAAATTTATACTCATGGTTGGGACATACGAAGAAAAAATCTTTAATAAAAGATGTGAAATAAAAGATCGGACATTGAGAAGGCTTATCAGTGATTATGAGCATTCAAAGCAGGAAGAACAGAATGCAGTTAGTTATTCAGATATTGACAATATAAGCAGTTCCCTTTCTACAGTTCTCGTTAAGAAGCCCCCAATTTCCAATAATTTGTCAGTTTTTTCTGTCAATAATGTTTCAGCTCTGTCTGCTGAAATTTTGCAGAACACAAAGGAATTAAATGAAGAATTAAACAAATGCATTAGACAAAAAGGTGACTTGTTTAAGAGTGGAGAGTTCCCCGTTGACAAGATCAAATTGGGAACTGCTGGTTACAAAGAAAGATATTATAAAGCAAAGTTTTCAGTTGAGGGCACTGATGTTGAAGGCAAAAGGAAAGAAATAGTCCATAAGTACACAGAAGGATTGGTGTGGGTTCTTCAGTACTATTTTTCAGGAGTTGCTTCGTGGACATGGTTTTATCCATACCACTATGGTCCATTTGCTTCAGACTTAAGGGGCATGGGTCAGGTGAGAGTAAATTTTGAGAAAGGTGTCCCATTCTTTCCATTTGATCAACTCTTAAGTGTTCTTCCCCCAAGGAGTGCTTGTGCACTTCCAAAAGCTTATGCACAATTAATGCTGGATGAGAACTCTAGTATATTTGACTGGTATCCTCAGGATTTTGAAATTGACACAGAAGGAAAACGCTTCATGTGGCAGGGTATCTGCAAACTTCCATGGATAGAGGAAAAACGGCTTTTGACTGAAACCAGAGAACTCAAAAAGGGATTATCTGAAAATGAAGCTATAAGAAATTCAGTCAAAGTTGATAGCTTGTTTGTTAGAATCACTAGCAAGTTGGCACAGAAATTTTGCTCCCATTCTCTGAAATCAAACCAATCTTTTAAGTTAGATATAAGTGATGGCATTGGGGGTAGCATAAGTCTTTGTCATGAGTGTGTTGAGAAGCCTTGCTCAGGGATAAAGATTTGTGACCACAAACAAGAAGATGGTGTCTTATGTTTTTATTATGAGCTTCCAGCTGGTTATAGTAATCATATTCCTCATTTACTTTCGGGTGTGAAAATTCCAATGAAGACAATTTTTGAAGATGATATCATGGAAACTGAGCTTTGGCATGAACGCCAAAATCTGAGTCGTTTTCAGAGGATGCAGATTCAAGATAAGAGGAGTACAAACTGTGAGAGCAGTACCTCAAATAGTTCTACTGAACATATAAGAAGGTTTTCATCAAATGTAGCTCCTCCTGAGGTCATTGTGAAAGGTGCTGGTGTTGGATGGGGTTCAGGTAGAGGGAAGCCAGACAATAATCCCAACATGCAAAGAATGGTTACTATGCCAAATGAGACTATTGTGCCTTTTGGTAGAGGACGTGGTAGGCTTCAACTAAACAGTCCCAATATGCATAGAATGGTTACTATGCCAAATGAGACTATTGTGCCTTTTGGTAGAGGACATGGTAGGCATCAACTGAATTCCAATAATGTAAATTCATGGAGGGGTGTTGCTTCTAACACCACATTGAGGCCTCAGGGGAATGATGCAGAGGGTTATCAAAGGAAAGACCAAAATCGTTGGTAG 2721 0.3822 MGVPSFYRWLVNKYPKVVEDVSTAMPNPNGLEYDNFYLDMNSIIHPCFHPDDINVIFNVIQSSQLTTFEDVFKNIFEHIDQLVSIVRPRKLLYMAIDGVVPRAKLNQQRARRFRTAKDNEIREAEEERLRNQFTMEGKQVLPKQESELSDPNIITPGTEFMHELSKALKAYISSRIASNSLWKDIMVILSDANVPGEGEHKIMSYIRKQRSLHGYDPNTSHCLYGSDADLIMLGMASHEPHFSILREDVIPEHQQQIAAKPFKFLHIWLLREYLELDMKIQDPPKNFSIDFERIIDDFIFMCFFAGNDFLPHMPSLGIHEGAIDLLMTVYKKQFSKIGGYLVDINKVGEKHAAFLKLSRVEKFILMVGTYEEKIFNKRCEIKDRTLRRLISDYEHSKQEEQNAVSYSDIDNISSSLSTVLVKKPPISNNLSVFSVNNVSALSAEILQNTKELNEELNKCIRQKGDLFKSGEFPVDKIKLGTAGYKERYYKAKFSVEGTDVEGKRKEIVHKYTEGLVWVLQYYFSGVASWTWFYPYHYGPFASDLRGMGQVRVNFEKGVPFFPFDQLLSVLPPRSACALPKAYAQLMLDENSSIFDWYPQDFEIDTEGKRFMWQGICKLPWIEEKRLLTETRELKKGLSENEAIRNSVKVDSLFVRITSKLAQKFCSHSLKSNQSFKLDISDGIGGSISLCHECVEKPCSGIKICDHKQEDGVLCFYYELPAGYSNHIPHLLSGVKIPMKTIFEDDIMETELWHERQNLSRFQRMQIQDKRSTNCESSTSNSSTEHIRRFSSNVAPPEVIVKGAGVGWGSGRGKPDNNPNMQRMVTMPNETIVPFGRGRGRLQLNSPNMHRMVTMPNETIVPFGRGHGRHQLNSNNVNSWRGVASNTTLRPQGNDAEGYQRKDQNRW* 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01169 906 MobiDBLite consensus disorder prediction 874 893 - -
Rops3g01169 906 Pfam XRN 5'-3' exonuclease N-terminus 1 248 IPR004859 GO:0003676|GO:0004527
Rops3g01169 906 MobiDBLite consensus disorder prediction 874 906 - -
Rops3g01169 906 MobiDBLite consensus disorder prediction 803 822 - -
Rops3g01169 906 PIRSF Exonuclease_Xrn2 251 905 IPR017151 GO:0004534|GO:0005634|GO:0006139
Rops3g01169 906 PIRSF Exonuclease_Xrn2 1 258 IPR017151 GO:0004534|GO:0005634|GO:0006139
Rops3g01169 906 MobiDBLite consensus disorder prediction 767 790 - -
Rops3g01169 906 CDD PIN_XRN1-2-like 36 274 - -
Rops3g01169 906 PANTHER 5'->3' EXORIBONUCLEASE 1 858 IPR027073 -
Rops3g01169 906 Gene3D - 550 647 - -
Rops3g01169 906 MobiDBLite consensus disorder prediction 767 789 - -
Rops3g01169 906 Pfam Xrn1 helical domain 289 746 IPR041412 -
Rops3g01169 906 Gene3D - 148 337 - -
Rops3g01169 906 Gene3D - 1 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01169 Rops-Chr3 16432225 16438953 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01169 - - gsj:114379404 1186.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01169 3 16432225 16438953 Rops3g01169 3 16432225 16438953 ECH