Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01164 ATGGCAAGTGTTTCTTTGGTCTCAGCTGCCTTAAGAAGGCTTGAGGGGAAGGTGGCAGTGATCACTGGTGGTGCTAGCGGCATAGGTGAGGCCACTGCAAGACTCTTCTCCAAGCATGGAGCTAAAGTGGTGGTAGCTGATGTCCAAGACGAATTGGGTCACTCAGTTTGCAAAGACTTGGAATCTTCATCCTCTTACATCCATTGTGACGTGACAAAGGAAAAGGACATTGAAAATGTTGTGGACACAACAGTTTCAAAGTTTGGGAAACTAGATATCATGTTTAATAACGCTGGCATAACTGGAGTGAACAAAACCAACATAGTTGACAACAAGAAATCTGAGTTTGAGGAAGTGATCAATGTTAACTTGGTTGGTGTCTTTTTGGGAACAAAGCATGCTGCAAGGGTCATGATTCCTGCTAGAAGGGGCAGCATAATTAACACAGCTAGTATATGTGGATCCATTGGTGGCGTGGCTTCACATGCATACACGAGTTCAAAGCATGCCGTAGAAGGGTTGATGAAGAACACCGCGGTGGAGCTTGGACAATATGGTATTCGAGTGAATTGTGTGTCACCTTATGTTGTTGCCACACCTTTGGCTAAGAATTTCTTCAAGCTCAATGACGAGGGAGTTCAAGCAGTTTATTCCAACTTGAAAGGTCCTGATCTTGTGCCAAATGATGTGGCTGAAGCTGCTCTGTACTTGGGAAGTGATGAGTCCAAGTATGTGAGTGGTCACAATCTAGTCATAGATGGAGGGTTCACAGTTGTGAACAATGGATTCTGTGTGTTTGGAAAATCTGGGTGA 813 0.444 MASVSLVSAALRRLEGKVAVITGGASGIGEATARLFSKHGAKVVVADVQDELGHSVCKDLESSSSYIHCDVTKEKDIENVVDTTVSKFGKLDIMFNNAGITGVNKTNIVDNKKSEFEEVINVNLVGVFLGTKHAARVMIPARRGSIINTASICGSIGGVASHAYTSSKHAVEGLMKNTAVELGQYGIRVNCVSPYVVATPLAKNFFKLNDEGVQAVYSNLKGPDLVPNDVAEAALYLGSDESKYVSGHNLVIDGGFTVVNNGFCVFGKSG* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01164 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Rops3g01164 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Rops3g01164 270 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Rops3g01164 270 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 259 IPR036291 -
Rops3g01164 270 FunFam Short-chain dehydrogenase reductase 2 261 - -
Rops3g01164 270 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 11 260 - -
Rops3g01164 270 Pfam Enoyl-(Acyl carrier protein) reductase 23 257 - -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 185 202 IPR002347 -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Rops3g01164 270 PRINTS Glucose/ribitol dehydrogenase family signature 220 240 IPR002347 -
Rops3g01164 270 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Rops3g01164 270 CDD secoisolariciresinol-DH_like_SDR_c 13 257 IPR045309 GO:0016616
Rops3g01164 270 Gene3D - 3 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01164 Rops-Chr3 16326343 16336212 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01164 14 258 Acyl Lipid Metabolism Gene Families AT1G63380 32.171 4.47e-32 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01164 - - gmx:100782627 461.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01164 3 16326343 16336212 Rops3g01164 3 16326343 16336212 ECH