Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01163 ATGGCAAGTTTTTCTTTGGTCTCTGTTGCATTAAGAAGGCTTGAGGGGAAGGTGGCAGTGATCACTGGTGGTGCTAGCGGCATAGGTGAGGCCACTGCAAGACTATTCTCAAGGCACGGAGCTAAAGTGGTGATAGCTGATGTCCAAGACGAATTGGGTCACTCTGTTTGCAAAGACTTGGAATCCTCATCCTCTTATATTCATTGTGACGTGACAAAGGAAAAGGACATTGAAAATGCTGTGGACACAACGGTTTCAAAGTATGGGAAACTAGACATCATGTTTAATAACGCTGGCATAACCGGAGTGAACAAAACCAACATAGTTGACAACAAGAAATCTGAGTTTGAAGAAGTGATCAATGTTAACTTGGTTGGTGTCTTTTTGGGAACAAAGCATGCTGCAAGGGTCATGATTCCTGCTAAAAGGGGTAGCATAATTAACACAGCTAGTACCTGTGGATGCATTGGTGGTCTGTCTTCACATGCATACACAAGTTCAAAGCATGCAGTAGTAGGGTTGGTGAAAAACACAGCGGTGGAGCTTGGACAATATGCCGCGCAGCACCCATTCTCCCCCCTCAATCTCTCAAATCTTCTCCCTTACTCCACCATAATTCACCAACTCTCATCCCAAACCTCAAATACCCTTACCAAAACTCCCACAAAATCCTATTTTTCCATCACCCAATCTTCCAAAAACCTCTCCATCTCATCTCTCTTCTCTTCCTCCAGTGAGCCACCGCCACCATGGGCCAAGCCATCGCCATCGGCGCGCCCATCTCCTCCGGTGAGCCGCCACCCAGTCAACACCAGCCTTCAACCTACAAATTCTTGA 837 0.4648 MASFSLVSVALRRLEGKVAVITGGASGIGEATARLFSRHGAKVVIADVQDELGHSVCKDLESSSSYIHCDVTKEKDIENAVDTTVSKYGKLDIMFNNAGITGVNKTNIVDNKKSEFEEVINVNLVGVFLGTKHAARVMIPAKRGSIINTASTCGCIGGLSSHAYTSSKHAVVGLVKNTAVELGQYAAQHPFSPLNLSNLLPYSTIIHQLSSQTSNTLTKTPTKSYFSITQSSKNLSISSLFSSSSEPPPPWAKPSPSARPSPPVSRHPVNTSLQPTNS* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01163 278 FunFam Short-chain dehydrogenase reductase 2 188 - -
Rops3g01163 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 89 100 IPR002347 -
Rops3g01163 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 164 183 IPR002347 -
Rops3g01163 278 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 144 152 IPR002347 -
Rops3g01163 278 Pfam short chain dehydrogenase 17 185 IPR002347 -
Rops3g01163 278 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 151 179 IPR020904 GO:0016491
Rops3g01163 278 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 15 185 IPR036291 -
Rops3g01163 278 PANTHER 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) 12 186 - -
Rops3g01163 278 Gene3D - 5 195 - -
Rops3g01163 278 MobiDBLite consensus disorder prediction 264 278 - -
Rops3g01163 278 PRINTS Glucose/ribitol dehydrogenase family signature 164 183 IPR002347 -
Rops3g01163 278 PRINTS Glucose/ribitol dehydrogenase family signature 18 35 IPR002347 -
Rops3g01163 278 PRINTS Glucose/ribitol dehydrogenase family signature 138 154 IPR002347 -
Rops3g01163 278 PRINTS Glucose/ribitol dehydrogenase family signature 89 100 IPR002347 -
Rops3g01163 278 MobiDBLite consensus disorder prediction 238 278 - -
Rops3g01163 278 MobiDBLite consensus disorder prediction 247 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01163 Rops-Chr3 16278250 16291407 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01163 11 181 Acyl Lipid Metabolism Gene Families AT1G24360 35.429 5.72e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01163 - - gmx:100782627 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01163 3 16278250 16291407 Rops3g01163 3 16278250 16291407 ECH