Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01152 ATGGTTATGGCGCCAAGAAAACATCGCAACCGTGAAATGCTGTTCGACTCCGTCATCGCTCTCGTCTTCATCCTCGTCGCTTGCGTCGACCTCTGCGACGCCACCGTCGTCGATGTTTACCGTCTCATCCAATACGACATGTCAGGTGTGCCGTTTGGATCGAGACTCGCTAGCCTCAACCACCACGCCGCTTCTCTTCACTTCTCTCCTCACGCCGATCTCTCTCGCACCGTTCTTCTCATACCTCTTCGCGAACTCAACATGTCCTTTGTTAAAGAATATATTACTGAAGGCAAGCCTCTTGGGGGTTTAATATTTTTGCTGCCCCAGATGTTCCGTTTTGAAAATAAAGGTGGTACAGGAACTAGTCATGAAGATGGGAGTAAAGAACTGCTGAAGAATGTGTTGGCTGAACTTGAACAAATACTTATACACACCAACTTACCTTATCCTGTTTATTTTGCTTTTGAGGATGATGACATTGATGCTGTGTTAACTGATATCAAGAAAAATGATGCCACTGGTCAGCCTGCTACTGCGACTACAGGCGGATACAAATTTGTTGTTTCAGCTCCAGAACCAAAGAAAGTTGTATCTCCACCCATTACAAATATTCAGGGATGGTTGGCAGGATTGAAGGCAGATGATGATGCTCATCAATTACCCACCATTGCGATAGTGGCATCATATGACACCTTTGGGGCTGCTCCTGCATTATCAGTGGGAAGTGATAGTAATGGAAGTGGCATTGTGGCTCTTCTTGAAGTAGCTAGGTTGTTTTCTCTTTTATATTCTAATCCAAAGACAAGAGGACAATACAATCTGCTGTTTGGGCTAACATCTGGTGGGCCTTACAACTACAATGGAACCCGTAAGTGGCTTCGGAGCTTTGATCAACGTCTGCGTGAGAGCATTGACTATGCTATTTGCTTAGATAGTATTGGCTCGTGGGAAAATGATTTGTGGATTCACGTGTCTAAGCCTGCAGAAAATGCCTACATTAAACAAATTATGGAAGACTTTTCAAGTGTTGCCGAAGAGTTAGGCTTTAAAGTGAATCTGAAGCATAAGAAAATAAACATTTCTAATCCTCGAGTAGCTTGGGAGCATGAACAGTTTTCAAGGCTGAGAATTACTGCTGCTACCCTCTCTGAACTCTCTACTGCACCTGAATTGCTAGAAAGAACCGGTGGTTTGGTCGACAGCAGGCATTTTGTCGATGAAGCTGCAATTGTCAGAAGTGTGAAATTAATTGCTGAAAGTCTTGCGAGGCATATTTATGGACATCAAGGAAAGAACATCCAGATCTTTGCAGACAACAGTAACTTGGCTGTAAATCCTTCTTATGTTAGATCATGGTTAGACGTTTTGTCCCAGACACCTCGAGTGGCGCCATTTTTCTCAAAAGATGATCCTTTTGTCATGGCACTGAAAAGGGAATTAGAAGATCATACCGATGAGGTCAATCTGCAACGAGAAGTGCTAGATGGGATGTTTACTTTCTACGATTCAACTAGGGCAAAGCTGAACATATATCAGGTTGCCAGTGTCACGTTCGACTTGCTGTTGCTTCTAGTTTTGGGATCGTATTTGATTGTGCTCTTCAGTTTCTTGGTCATCACAACTAGGGGTCTTGATGATCTAATCAGTTTATTTCGGCGGCCTCCTTCTCGAAAAGTGAAAACTGCGTAG 1692 0.4356 MVMAPRKHRNREMLFDSVIALVFILVACVDLCDATVVDVYRLIQYDMSGVPFGSRLASLNHHAASLHFSPHADLSRTVLLIPLRELNMSFVKEYITEGKPLGGLIFLLPQMFRFENKGGTGTSHEDGSKELLKNVLAELEQILIHTNLPYPVYFAFEDDDIDAVLTDIKKNDATGQPATATTGGYKFVVSAPEPKKVVSPPITNIQGWLAGLKADDDAHQLPTIAIVASYDTFGAAPALSVGSDSNGSGIVALLEVARLFSLLYSNPKTRGQYNLLFGLTSGGPYNYNGTRKWLRSFDQRLRESIDYAICLDSIGSWENDLWIHVSKPAENAYIKQIMEDFSSVAEELGFKVNLKHKKINISNPRVAWEHEQFSRLRITAATLSELSTAPELLERTGGLVDSRHFVDEAAIVRSVKLIAESLARHIYGHQGKNIQIFADNSNLAVNPSYVRSWLDVLSQTPRVAPFFSKDDPFVMALKRELEDHTDEVNLQREVLDGMFTFYDSTRAKLNIYQVASVTFDLLLLLVLGSYLIVLFSFLVITTRGLDDLISLFRRPPSRKVKTA* 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01152 563 Gene3D Zn peptidases 152 426 - -
Rops3g01152 563 Coils Coil 474 494 - -
Rops3g01152 563 CDD M28_nicalin_like 136 429 - -
Rops3g01152 563 Pfam Nicastrin 224 362 - -
Rops3g01152 563 PIRSF Nicalin 3 558 IPR016574 GO:0009966|GO:0016020
Rops3g01152 563 PANTHER NICALIN 13 563 IPR016574 GO:0009966|GO:0016020
Rops3g01152 563 ProSitePatterns EF-hand calcium-binding domain. 244 256 IPR018247 -
Rops3g01152 563 SUPERFAMILY Zn-dependent exopeptidases 149 407 - -
Rops3g01152 563 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 28 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01152 7 561 EF-hand Containing Proteins AT3G44330 73.703 0.0 849
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01152 K26499 - gmx:100779713 1017.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01152 3 16103153 16114093 Rops3g01152 3 16103153 16114093 ECH