Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01148 ATGGCGATTTTCTATGCTTTGGTGGCCAGAGGTACGGTGGTGTTGGCGGAGTTCAGCGCCGTCACCGGAAACACTGGCGCCGTCGCCCGCCGAATAATCGAGAAGCTTCCGGAACAATCCGATTCCAGGCTTTGCTTCTCTCAGGATCGTTACATCTTTCACATACTCCGATCTGATGGCCTCACCTACCTTTGTATGGCCAACGACACCTTCGGAAGGAGAATTCCTTTCTCATACTTGGAAGATATCCAAATGAGGTTTATGAAGAACTATGGTAGAGTTGCCAATTATGCACCAGCTTACGCAATGAATGATGAGTTTTCAAGGGTTTTGCATCAGCAAATGGAATTTTTTTCTAGTAATCCTAGTGTGGATACCCTCAATCGTGTGAGGGGTGAAGTTGGAGAGATACGCACTATCATGGTGGACAATATCGAGAAAATATTGGAGAGAGGTGACCGGATTGAGCTTCTTGTTGACAAGACAGCAACAATGCAAGACAGTTCATTTCACTTTAGGAAACAGTCAAAGCGCCTTCGAAGAGCTCTTTGGATGAAAAATTTCAAACTCCTGGCGTTGTTGACGTGTTTGATAGTTCTCATTCTTTACTTCATAATCGCGGCTTGTTGTGGAGGCATCACTCTACCATCCTGCAGATCTTAA 663 0.4525 MAIFYALVARGTVVLAEFSAVTGNTGAVARRIIEKLPEQSDSRLCFSQDRYIFHILRSDGLTYLCMANDTFGRRIPFSYLEDIQMRFMKNYGRVANYAPAYAMNDEFSRVLHQQMEFFSSNPSVDTLNRVRGEVGEIRTIMVDNIEKILERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFIIAACCGGITLPSCRS* 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01148 220 FunFam Vesicle-associated membrane protein 7 124 209 - -
Rops3g01148 220 Gene3D - 124 209 - -
Rops3g01148 220 CDD R-SNARE 125 184 - -
Rops3g01148 220 SUPERFAMILY SNARE-like 3 118 IPR011012 -
Rops3g01148 220 ProSiteProfiles v-SNARE coiled-coil homology domain profile. 126 186 IPR042855 -
Rops3g01148 220 ProSiteProfiles Longin domain profile. 7 111 IPR010908 -
Rops3g01148 220 Gene3D Longin domain 1 123 - -
Rops3g01148 220 Pfam Synaptobrevin 124 211 IPR042855 -
Rops3g01148 220 ProSitePatterns Synaptobrevin signature. 144 163 IPR001388 GO:0016020|GO:0016192
Rops3g01148 220 CDD Longin 4 118 IPR010908 -
Rops3g01148 220 PANTHER SNARE PROTEINS 1 209 - -
Rops3g01148 220 SMART Longin_2 28 110 IPR010908 -
Rops3g01148 220 Pfam Regulated-SNARE-like domain 29 108 IPR010908 -
Rops3g01148 220 SUPERFAMILY SNARE fusion complex 121 188 - -
Rops3g01148 220 FunFam Vesicle-associated membrane protein 714 1 124 - -
Rops3g01148 220 PRINTS Synaptobrevin signature 187 206 IPR001388 GO:0016020|GO:0016192
Rops3g01148 220 PRINTS Synaptobrevin signature 131 150 IPR001388 GO:0016020|GO:0016192
Rops3g01148 220 PRINTS Synaptobrevin signature 151 170 IPR001388 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01148 Rops-Chr3 16076765 16081884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01148 1 220 Miscellaneous Gene Families AT5G22360 88.235 1.96e-147 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01148 K08515 - gmx:100808089 409.838
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01148 3 16076765 16081884 Rops3g01148 3 16076765 16081884 ECH