LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Rops3g01119	ATGGACACTGACGCACGCGAGGGTTCCGGTCTCCTATGGGGAGTAACCGTTACTCCCTTCGCCGCCGTCGACGAGGACGGCCAATCTCCGGCTTACGGATCCGGCGGCGACCTCTTGCCACGGTGCGATAATTGCTATGCTTACTTCAACAATTACTGCGAACTCGAACAGTGGACATGGTCTTGCTCTCTCTGTGGAAACCTCAATGGTCTTTCTTCCAATGCCATCGAACGATATTCTCGACCTCAATCTTGTGCTGAGATGATGTCATCCTTCGTAGATCTCGAATTGCCTCCACAAGATGGATCGTCGGAGGATGTAGCAATGCAAGCGTGTCCGGTTTATGTTGCTGCTGTTGACTTGTCGTCTTCAGAGGAGTTTCTTGAACTCACTAAAAGTGCATTGCTAGCTGCTTTGGAAGCTCTTGCTCCTGGTTCACTTTTTGGGCTTGCTACCTTCAGCCACAAACTAGGATTGTATGATGTTCAAGGTCCAATACCTGTTGTGAAAAATGTTTTCATCCCTCATGATGCTGAGGGAACCTTGTCACTTGAGCTTGATGATGTCATGCCTTTGTTACAGTTTCTGGCTCCCGTGGAAACTTGTAAAGACCGGATTGCATCTGCACTTGAAACACTTAGACCAACAACTTCATGGGAGAGAACCACAGCAGCAGGTCAAGGACTGGATGGCGTTCTGATTGGTGGGCGTGGTTTTGGGGTGGCCATGGAAGCCCTTTGCAGTTACCTTGGATCTGAATATGGAAACACTTTTGCTTTAGCTAGAATCTTTGCTTTCTTGTCTGGTCCCCCTGATTTTGGAGCTGGACAATTGGACACAAGACGATATGGTGAGCAATATGCAAGCAAAGGAGAGGATGCAGATCGTGCTTTACTCCCGGAGCAGACACCATTTTATAAAGATCTGGCTGCTGTTGCTGTTCAAGCAGGTGTATGTGTTGACATATTTGCCGTAACAAATGAGTACACTGATTTGGCATCCCTAAAATTTCTGAGTATTGAAAGTGGGGGTTCCTTATTTTTATATACAAGTACCGAGGATTCAACTTTGCCTCAGGACATGTATCGAATGCTTAGTCGGCCATATGCTTTTGGTTGTGTCCTGCGATTAAGAACCTCAACTGAATTTAAACCTGGCAATTCTTATGGTCACTTCTTTCCAGATCCACAGTATGAAAATGTTCAACACATCATATGTTGTGATTCTTATGCTACGTATGCTTATGACTTTGTGTTTGAGAACAACATTGGATTTTCAAGAACTAAATCAGATGTTCCTACGATTCAGATTGCATTTCAGTACGCAGTTGTAGTTCCTCCTCAGGACCTTTCCAATTCAGAAGGGGTTTCTACAAGCGGAACCAAGCATTCCCTTCAACGTCGGCTAAGGATCCGAACATTGCAGTTTGGCGTTGCCCAGAACATTCATGAACTTTACGACAGCTGTGATCCTGAAGTTGTTCTATCTTTGCTCATCCACAAGGTTATACTAGCCTCTTTGGAGGAAGGAGTTCGGGAGGGTAGAATTTTGCTTCAAGAATGGCTAGTGATCCTTGCAGCTCAGTACAATGATGTTTATAAACTTGTTCAGTATAGTAATGGAAGTTCCATAAGATCTCAGATTGATGTTGCGTTCTCTCAATGTCCTCAACTGCAGCCCCTACCACGCCTAATATTTGCTCTCCTTCGAAATCCTCTTCTCCGCTTTCATGAAGAAGGTGTTCACCCTGACTATCGCATCTATCTTCAATGCCTTTTTAGTGTGTTGGAACCAAGTTCCCTTCACCGGGCCGTGTATCCAGTATTGACATCCTATGCTACTCCAGATAAACAAGCATTTCCTCGCCATTCGTTGAGTCGTGCTGCACTGATTACCAGTGGCAGTCCGATATTTTTCCTTGATGCATTCACAATCCTGATTGTGTTCTATTCTTCAACTGCAGACCCAACACTTCCTTTTCCTCCACCCCATGATTGTTTGTTAAGGACTACAATCAACAAATTGAAGCAAGAGAGATGCATCACTCCTAAACTCATTTTTATTAAAGGAGGGCAGGATGATGCCTCAATTTTTGAGAACTTTCTGATTGAAGAACAGGATGTTGACGGAAGTGGTCTTACAAGTGTGATGGGTTTTGTTTCCTTTCTTGAAGATATTACTCAGAAAGTCTTGGAATTCATGAAATAG	2208	0.4429	MDTDAREGSGLLWGVTVTPFAAVDEDGQSPAYGSGGDLLPRCDNCYAYFNNYCELEQWTWSCSLCGNLNGLSSNAIERYSRPQSCAEMMSSFVDLELPPQDGSSEDVAMQACPVYVAAVDLSSSEEFLELTKSALLAALEALAPGSLFGLATFSHKLGLYDVQGPIPVVKNVFIPHDAEGTLSLELDDVMPLLQFLAPVETCKDRIASALETLRPTTSWERTTAAGQGLDGVLIGGRGFGVAMEALCSYLGSEYGNTFALARIFAFLSGPPDFGAGQLDTRRYGEQYASKGEDADRALLPEQTPFYKDLAAVAVQAGVCVDIFAVTNEYTDLASLKFLSIESGGSLFLYTSTEDSTLPQDMYRMLSRPYAFGCVLRLRTSTEFKPGNSYGHFFPDPQYENVQHIICCDSYATYAYDFVFENNIGFSRTKSDVPTIQIAFQYAVVVPPQDLSNSEGVSTSGTKHSLQRRLRIRTLQFGVAQNIHELYDSCDPEVVLSLLIHKVILASLEEGVREGRILLQEWLVILAAQYNDVYKLVQYSNGSSIRSQIDVAFSQCPQLQPLPRLIFALLRNPLLRFHEEGVHPDYRIYLQCLFSVLEPSSLHRAVYPVLTSYATPDKQAFPRHSLSRAALITSGSPIFFLDAFTILIVFYSSTADPTLPFPPPHDCLLRTTINKLKQERCITPKLIFIKGGQDDASIFENFLIEEQDVDGSGLTSVMGFVSFLEDITQKVLEFMK*	736

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Rops3g01119	735	Gene3D	Sec23/Sec24 helical domain	461	618	-	-
	Rops3g01119	735	SUPERFAMILY	vWA-like	113	367	IPR036465	-
	Rops3g01119	735	SUPERFAMILY	Helical domain of Sec23/24	490	606	IPR036175	GO:0006886\|GO:0006888\|GO:0030127
	Rops3g01119	735	Pfam	Sec23/Sec24 trunk domain	112	364	IPR006896	GO:0006886\|GO:0006888\|GO:0030127
	Rops3g01119	735	Gene3D	-	19	91	-	-
	Rops3g01119	735	Pfam	Sec23/Sec24 helical domain	490	602	IPR006900	GO:0006886\|GO:0006888\|GO:0030127
	Rops3g01119	735	PANTHER	SEC24-RELATED PROTEIN	7	728	-	-
	Rops3g01119	735	SUPERFAMILY	beta-sandwich domain of Sec23/24	6	489	-	-
	Rops3g01119	735	Gene3D	von Willebrand factor, type A domain	112	369	IPR036465	-
	Rops3g01119	735	SUPERFAMILY	Zn-finger domain of Sec23/24	37	99	IPR036174	GO:0006886\|GO:0006888\|GO:0008270\|GO:0030127

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Rops3g01119	Rops-Chr3	15321532	15329830	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Rops3g01119	-		-	gmx:100807557	1384.01

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Rops3g01119	3	15321532	15329830	Rops3g01119	3	15321532	15329830	ECH