Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01106 ATGGAAATTTTGAAGCTTCATGAAACAAGGTCTCATGTTCATGCACCTGGGGATGAAGAGAAGGTGATGACAAGGAAGCAGAAGGCTGAGTCTAAGGCGCCTGAAGTAGAGCATTCTCCTAAGAAGGCCAAGGTGGAAAATGAGGATGGCCAAACCAATGGAAAATCTGCTACTGATGTTGCAGAAGAATATGATGAGTTCTGTAAAGCCACCAATGAGCACCTCCCTTTAGAGCAAATGAAAGAAATCTTGGAAGCTAATGGCCTTGATTCTACTGGCTCTGATCTTGAAATTAAAAGAAGATGCCAAGACATGCTGTTTTTTGGTGCATTAGACAAATGCTCGGTTTGCAATGGCAATTTGGAGTTTGATGGCAGACGTTATGTTTGCAAAGGGTTCTACAGTGAGTGGGCTAGTTGCACTTTCAGCACAAGGGACACTCCAAGGAAAGAGGAACCCATTAAACTACCAGATTCTGTTCAAAATTCTTTGGTTTCAGATTTGCTGGAGAAATACCAGGATCCAAGTCGCAGGCCTCACAGGGATTTAGGTTTAGCTGAGAAGCCTTTTACTGGAATGATGATATCTCTGATGGGTCGTCTTAGTAGGACACATCATTATTGGAAAGCAACTATTGAAAAGCATGGAGGGAAGGTGGCAAACTCTATTATTGGGGCAACTTGTTTGGTGGCTTCACCTGCTGAGCGAGACCGTGGTGGCACATCCAAACTTGCAGAGGCCATGGAGAGGGGTATACCTGTGGTTAGGGAGGCTTGGTTAACTGACAGCATTGAAAAACAAGAACCACAACAATTGGAAGCTTATGATCTTGTCTCTGATCTTTCTGTGGATGGCAAGGGAATCCCCTGGGACAAACAAGATCCTGGGGAGGAGGCTATTGAATCACTCTCAGCAGAACTCAAGCTTTATGGGAAGAGAGGGGTCTATAAAGATACCAAGTTGCAGGAACAAGATGGAAAGATATTTGAAAAAGATGGGATACTGTACAACTGTGCCTTCTCTGCTTGTGACCAAGGGCGAGGACTTAATGACTACTGTGTCATGCAACTCATTGTTATCCCAGAGAACCGTTTGCATCTGTACTTTAAAAAAGGGAGAGTTGGTGATGATCCAAATGCAGAGGAACGATTAGAAGAGTGGGAGAATGTTGACAATGCTCTGAAAGAGTTTGTGAGGCTCTTTGAGGAAATAACAGGAAATGAATTTGAACCTTGGGAAAGAGAGAAGAAGTTCCGGAAGAAGCCACTGAAATTTCATCCCATTGACATGGATGATGGGGTTGAAGTGAGACATGGTGCACTTGGTCTAAGGCAGCTGGGGATAGCAGTAACACACTGCAAACTTGAGCCTCTAGTTGCAAATTTTATGAAGGTTATGTGCAGCCAGGAGATATATAGGTATGCATTGATGGAGATGGGTTATGACTCTCCAGACCTTCCAATAGGAATGGTTACAAATCTTCACCTGAAAAGATGTGAGGAAGTTCTGTTAGAATTCATAGAGAAGGTGAAATCATTGAAAGAGACTGGGCCCATGGCTGAGGCTGTTTGGTCTGATTTTAGCCAGAGATGGTTCACTCTGATGCACTCCACAAGGCCTTTCACTTTTAGAGATTATCAGGAGATTGCAGATCATGCTGCTGCTGCCTTGGAAGGTGTTAGAGACATAACCCTGGCTTCTCACCTCATAGGAGATATGAGTGGTTCTACCATTGATGATCCATTATCACAGACATACAAGAAATTGGGTTGCTCAATTTCTCCCTTGGAGAAAAATTCAAATGATTATGAGATGATCGTGAAGTACCTAGAAAAAACTTATGAGCCAATCAAACTCGGTGACATTGAATATGGGGTGTCGGTTGAAAACATTTTTGCTGTGGAATCAAATGCTTACCCTTCCTATGAAGACATAGCAAAGCTGCCAAACAAGGCTCTTCTATGGTGTGGATCACGAAGCTCAAATCTTTTGAGGTACTTGCACAAGGGGTTCTTGCCAGCTATATGTTCACTACCAGTTCCGGGTTATATGTTTGGCAAAGCTATTATTTGTTCTGATGCTGCAGCAGAGGCTGCAAGATATGGTTTTACTGCTGTGGACAGCCCAGAAGGGTTCTTGGTTTTGGCCATTGCTTCTCTAGGAAATGAGATCACTGAGTTTAAAAGCCCACCTGAGGACACATCATCTTTGGAGGAAAAGAAGCTTGGAGTGAAGGGACTGGGGAAGAAGAAAACAGATGAATCAGAACACTTTGTTTGGAAAGATGACATAAAAGTTCCTTGTGGTCGAATAATTGCCTCAGAGCAAGAAGATAGTCCTTTGGAATACAATGAGTATGCTGTCTATGATCCTAAGCAGGTACGCATAAGCTATTTGGTGGGAGTGAAGTATGAAGAGAAGGGCGTGGTGATGGACACGGCAGAGTGA 2448 0.4342 MEILKLHETRSHVHAPGDEEKVMTRKQKAESKAPEVEHSPKKAKVENEDGQTNGKSATDVAEEYDEFCKATNEHLPLEQMKEILEANGLDSTGSDLEIKRRCQDMLFFGALDKCSVCNGNLEFDGRRYVCKGFYSEWASCTFSTRDTPRKEEPIKLPDSVQNSLVSDLLEKYQDPSRRPHRDLGLAEKPFTGMMISLMGRLSRTHHYWKATIEKHGGKVANSIIGATCLVASPAERDRGGTSKLAEAMERGIPVVREAWLTDSIEKQEPQQLEAYDLVSDLSVDGKGIPWDKQDPGEEAIESLSAELKLYGKRGVYKDTKLQEQDGKIFEKDGILYNCAFSACDQGRGLNDYCVMQLIVIPENRLHLYFKKGRVGDDPNAEERLEEWENVDNALKEFVRLFEEITGNEFEPWEREKKFRKKPLKFHPIDMDDGVEVRHGALGLRQLGIAVTHCKLEPLVANFMKVMCSQEIYRYALMEMGYDSPDLPIGMVTNLHLKRCEEVLLEFIEKVKSLKETGPMAEAVWSDFSQRWFTLMHSTRPFTFRDYQEIADHAAAALEGVRDITLASHLIGDMSGSTIDDPLSQTYKKLGCSISPLEKNSNDYEMIVKYLEKTYEPIKLGDIEYGVSVENIFAVESNAYPSYEDIAKLPNKALLWCGSRSSNLLRYLHKGFLPAICSLPVPGYMFGKAIICSDAAAEAARYGFTAVDSPEGFLVLAIASLGNEITEFKSPPEDTSSLEEKKLGVKGLGKKKTDESEHFVWKDDIKVPCGRIIASEQEDSPLEYNEYAVYDPKQVRISYLVGVKYEEKGVVMDTAE* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01106 815 ProSiteProfiles PARP catalytic domain profile. 580 811 IPR012317 GO:0003950
Rops3g01106 815 MobiDBLite consensus disorder prediction 1 49 - -
Rops3g01106 815 Gene3D - 36 109 - -
Rops3g01106 815 ProSiteProfiles WGR domain profile. 325 425 IPR008893 -
Rops3g01106 815 SUPERFAMILY BRCT domain 182 288 IPR036420 -
Rops3g01106 815 SMART WGR_cls 336 419 IPR008893 -
Rops3g01106 815 Gene3D - 590 806 - -
Rops3g01106 815 FunFam Poly [ADP-ribose] polymerase 447 589 - -
Rops3g01106 815 SUPERFAMILY WGR domain-like 301 430 IPR036930 -
Rops3g01106 815 Pfam Poly(ADP-ribose) polymerase catalytic domain 600 803 IPR012317 GO:0003950
Rops3g01106 815 Pfam WGR domain 336 415 IPR008893 -
Rops3g01106 815 Pfam Poly(ADP-ribose) polymerase, regulatory domain 453 586 IPR004102 GO:0003950
Rops3g01106 815 SUPERFAMILY ADP-ribosylation 589 806 - -
Rops3g01106 815 Coils Coil 496 516 - -
Rops3g01106 815 Pfam PADR1 (NUC008) domain 101 150 IPR012982 GO:0008270
Rops3g01106 815 PANTHER DNA LIGASE 16 803 - -
Rops3g01106 815 Gene3D - 110 173 IPR038650 -
Rops3g01106 815 CDD BRCT_PARP1 190 265 - -
Rops3g01106 815 SMART PADR1_2 98 151 IPR012982 GO:0008270
Rops3g01106 815 Gene3D - 448 589 IPR036616 GO:0003950
Rops3g01106 815 ProSiteProfiles BRCT domain profile. 185 277 IPR001357 -
Rops3g01106 815 ProSiteProfiles Generated from MSF file: '/work/www/psmaker/tmp/pfmake.input.483415'. 42 182 IPR047572 GO:0008270
Rops3g01106 815 ProSiteProfiles PARP alpha-helical domain profile. 452 571 IPR004102 GO:0003950
Rops3g01106 815 CDD WGR_PARP1_like 326 432 - -
Rops3g01106 815 CDD parp_like 452 803 - -
Rops3g01106 815 Pfam BRCA1 C Terminus (BRCT) domain 187 264 IPR001357 -
Rops3g01106 815 SUPERFAMILY Domain of poly(ADP-ribose) polymerase 452 588 IPR036616 GO:0003950
Rops3g01106 815 FunFam Poly [ADP-ribose] polymerase 590 806 - -
Rops3g01106 815 MobiDBLite consensus disorder prediction 1 55 - -
Rops3g01106 815 SMART BRCT_7 187 267 IPR001357 -
Rops3g01106 815 Gene3D BRCT domain 185 284 IPR036420 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01106 Rops-Chr3 15148163 15152213 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01106 K10798 - gmx:100788978 1488.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01106 3 15148163 15152213 Rops3g01106 3 15148163 15152213 ECH