Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01105 ATGAAACGCAACGTTCGCCCTCTCTTCATTCTCCTCCTCCTTCTCGTTCTCTTGGTCACGTTCACCTCACGTGCCATTGTTCGAAGGGGAATACTCTCCATCGAGCTCGAAACGCGCGTTTTGATTCACGATTCCCCGGCGCCGCCGTTGAACGCCACGCTTCTCCAACACGCCGCCGTGGAAATCGGCGAGGATAAATTCCGGCAAGAGATCCAGCAGCTCCTCGACGGCAACTTCGGGAGCCAAGCGCGGCACAGAACCTTCGTTTCGTGGCGGCGATTCATCCACCACGATGGTGATAAGAATTTCCCGGCGAATCTCCGGTCGCCGTTGTTCTACCGGTACTGGTTGGATTTCCGGCGAGTGCTTCACAATTGGGTAAGAAAACGCCGATTCCAACCCGGTATCATGTTCGAGTTGACTCGGTTGGTGAAGGATCCAATTGACCGAGTCAACTCAGTGATGGGGATGGCTAATTCTAGTAACAAAAAGTACTCTTCATGTGCTGTTGTTGGTAACAGTGGAATTTTGCTTAATAGGGACTATGGTTCTTTAATTGATTCTAATGAGGTTGTTATAAGGTTGAACAATGCTAGGGTTGAGAATTTTGAGAACAAGGTTGGGAAGAAAACAAGTATTTCATTTGTGAATAGTAACATTTTGCATTTGTGTGCAAGAAGGGCAGGGTGTTTTTGTCACCCTTATGGTGCTAATGTGCCAATTGTTATGTACGTTTGTCAAGCCATGCATTTCATGGATTACACTGTTTGCAATACTTCTCACAAGGCTCCTTTGTTGGTAACAGATCCTAGGTTTGATGTGTTGTGTGCTAGGATTGTGAAGTATTACTCTTTGAAGAGGTTTGTGGAGGAGACAGGGAAAGGTTTGGAGCAATGGGGTTCTGCTCATGATGGGTCTTTGTTTCATTATTCTTCTGGTATGCAGGCTGTGATGTTGGCTTTGGGGATTTGTGATAAAGTTAGCATTTTTGGGTTTGGGAAATCAGCTTCTGCTAAACACCATTATCATACTAACCAGAAGGCTGAGCTTCATTTGCATGATTATGAGGCCGAGTATGCATTTTACCGTGACCTTGTGGATGGGCATAAGCCTATTCCATTTCTATCGGACAAGTTCAAGATTCCTCCTGTTGTTATGTATCAATGA 1167 0.4567 MKRNVRPLFILLLLLVLLVTFTSRAIVRRGILSIELETRVLIHDSPAPPLNATLLQHAAVEIGEDKFRQEIQQLLDGNFGSQARHRTFVSWRRFIHHDGDKNFPANLRSPLFYRYWLDFRRVLHNWVRKRRFQPGIMFELTRLVKDPIDRVNSVMGMANSSNKKYSSCAVVGNSGILLNRDYGSLIDSNEVVIRLNNARVENFENKVGKKTSISFVNSNILHLCARRAGCFCHPYGANVPIVMYVCQAMHFMDYTVCNTSHKAPLLVTDPRFDVLCARIVKYYSLKRFVEETGKGLEQWGSAHDGSLFHYSSGMQAVMLALGICDKVSIFGFGKSASAKHHYHTNQKAELHLHDYEAEYAFYRDLVDGHKPIPFLSDKFKIPPVVMYQ* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01105 388 PIRSF Sialyl_trans 1 376 IPR012163 GO:0006486|GO:0008373
Rops3g01105 388 Gene3D Glycosyl transferase family 29 53 371 IPR038578 -
Rops3g01105 388 Pfam Glycosyltransferase family 29 (sialyltransferase) 141 367 IPR001675 GO:0006486|GO:0008373
Rops3g01105 388 PANTHER BETA-1,6-GALACTOSYLTRANSFERASE GALT29A 1 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01105 Rops-Chr3 15145043 15147006 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Rops3g01105 163 332 Glycosyltransferase AT3G48820 23.529 2.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01105 K00786 - gmx:100789506 642.499
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01105 3 15145043 15147006 Rops3g01105 3 15145043 15147006 ECH