Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01030 ATGGCTCCGATTCCGTCTGAGAACGGTGTTGAAGGAGACGACGAGAGAGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAATGGAAGATGAGGAAGATGAAGAGGAACCAAGGCTCAAGTACCAGAGAATGGGAGGTAGCGTACCTTCGCTGCTAGGTACTGATGCGGCGTCGTGTATTGCTGTTGCGGAGCGGATGATCGCTCTCGGTACTCATGGTGGCACCGTTCACATCCTTGATTTTCTCGGGAATCAGGTGAAAGAATTCTCTGCCCATGCTTCTGTTGTCAACGACCTTAGCTTTGACATTGAAGGTGAATATATTGGAAGCTGTTCTGATGACGGATCGGTTGTCATAAACAGCCTTTTTGCTGATGAGAAAATGAAATTTGAATACCATCGCCCCATGAAGGCTATTGCTTTGGACCCAGATTATGAAAGGAAAATGTCTAGGAGGTTTATTGCTGGAGGTTTAGCTGGTAATTTATATTTGAATTCGAAGAAATGGTTGGGCTATCGTGACCAGGTTTTGCACTCTGGTGAAGGTTCAATACATGCTGTGAAATGGAGAGCAAGCCTTGTTGCTTGGGCTAATGATGCAGGAGTGAAGGTTTATGATACTGCCAATGACCAGCGTGTAACATTTATTGAAAAACCACGAGGAGGCTGCCCACGCCCTGAGCTTTTGCTTCCTCACCTGGTTTGGCAGGATGACACCCTTTTGGTTATTGGCTGGGGAACATCAGTCAAAATTGCTTCAATAAGGACAAATCACGATAAAGCAGCCAATGGGACATACAGGCAAGTTCCTTTGTCTGGTATGACCCAGGTGGATATTGTAGCATCTTTTCAAACCAGCTATTTCATCTCAGGAATTGCCCCCTTTGGTGATGCTCTGGTTGTTCTAGCTTATATTCCTGGAGAAGAAGATGGAGATAAGGATTTTAGTAGCACTGCTCCTTCACGGCAGGGCAATGCACAAAGACCAGAAGTAAGAGTAGTAACATGGAATAATGATGAACTTTCAACAGATGCTCTGCCAGTACATGGGTTTGAGCATTACAAGGCAAAGGACTATTCTCTTGCTCATGCTCCCTTCTCAGGTAGCAGTTATGCTGGTGGTCAGTGGGCTGCAGGTGATGAACCACTATACTATATTGTATCCCCAAAGGATGTGGTTATTGCAAAGCCAAGGGATACTGAAGATCATATTGCCTGGCTTCTTCAACATGGATGGCATGAAAAAGCTTTAGCTGTGGTTGAATCTGGTCAGGGACGGAGTGAATTACTTGATGAGGTGGGATCTAGATACCTTGATCATCTGATTGTGGAAAGAAAATATGGTGAAGCAGCTTCATTGTGTCCCAAGTTACTGAGAGGATCAGCTTCAGCATGGGAGAGATGGGTCTTTCACTTTGCACACCTTCGTCAACTCCCTGTTTTGGTTCCTTACATGCCTACGGAAAACCCCAGACTACGTGATACTGCTTATGAGGTTGCTCTTGTTGCATTGGCTACAAATCCATCTTTACATAAGGATCTCTTGTCCACTGTAAAATCCTGGCCATCTGTAATTTATTCTGGATTACCTGTTATTTCAGCCATTGAACCTCAGCTAAATACTTCATCCATGACTGATTGGCTCAAGGAGGCATTAGCAGAGCTGTATGTAATCGATGGGCAATATGAGAAAGCCTTCTCATTGTATGCTGATCTTATGAAGCCAGAAGTATTTGATTTCATTGAGAAATATAACCTACATGATGCAATTCGTGAAAAGGTTGTCCAACTGATGGTGTTAGATTGCAAGCGTGCAGTTCCTCTGTTAATCCAGAACAGGGATATAATAAGTCCACCTGAGGTTGTGAAGCAACTTAAAAATGCTGATAATAAGTGTGACTCCAGATACTTTTTACATCTATATCTCCATTCGTTATTTGAAGTAAATCCACATGCTGGGAAAGACTTCCATGATATGCAGGTGGAACTCTATGCAGACTATGATCCAAAGATGCTGCTACCTTTCCTTCGTAGCAGTCAACACTATACCCTAGAGAAGGCTTACGAAATTTGCATTAAAAGAGACCTAATGAGGGAGCAAGTCTTCATCTTAGGAAGGATGGGAAACTCAAAACAAGCCCTGGCCGTTATTATAAATAAATTGGGGGATATAGAGGAGGCTGTAGAGTTTGTCACTATGCAGCATGATGATGAACTCTGGGAAGAACTAATCAAGCAGTGCCTTCACAAACCTGAAATGGTGGGCATACTATTGGAGCATACGGTTGGAAATCTTGATCCCCTCTACATTGTAAATAAGGTTCCTAACGGGTTGGAAATACCTCGGCTCAGGGATCGGTTGGTTAAAATTATCACTGATTACAGGACCGAAACATCACTCAGACATGGGTGCAATGATATCCTTAAGGCGGACTGTGTCAATCTTTTGATTAAGTATTACAAAGAGGCAAGGCATGGAGTTTCTTTAGGTAATGAAGAAGATGAGCCACGAGTTAAAATGAGTGACACTCGTGCTTCTCAGGTATTTGAGAAATCCCCAAGTCTGAGAACCATGGAGTTGAAGTCAAAGACAAGGGGAGGTGGAAGATGTTGCATATGTTTTGACCCATTTTATATACAGAATGTATCAGTCATTGCATTCTTTTGCTGTCATGGTTATCACACAACTTGTCTCACAGACTCTACCTACACTAATAGTAGCAAGAAAGAGATTGAAGCCACTTCCCAAGAGACAGGAACTTATGATGATTACAATGGTTATGTGGATGATGCTAGCGATGATAATGAAGAAACCGAATCCGGTGGTCCTCGTTTGCGTTGTATATTGTGTACTACTGCGGCTGTTTGA 2880 0.4302 MAPIPSENGVEGDDEREEEEEEEEEEEEEEEMEDEEDEEEPRLKYQRMGGSVPSLLGTDAASCIAVAERMIALGTHGGTVHILDFLGNQVKEFSAHASVVNDLSFDIEGEYIGSCSDDGSVVINSLFADEKMKFEYHRPMKAIALDPDYERKMSRRFIAGGLAGNLYLNSKKWLGYRDQVLHSGEGSIHAVKWRASLVAWANDAGVKVYDTANDQRVTFIEKPRGGCPRPELLLPHLVWQDDTLLVIGWGTSVKIASIRTNHDKAANGTYRQVPLSGMTQVDIVASFQTSYFISGIAPFGDALVVLAYIPGEEDGDKDFSSTAPSRQGNAQRPEVRVVTWNNDELSTDALPVHGFEHYKAKDYSLAHAPFSGSSYAGGQWAAGDEPLYYIVSPKDVVIAKPRDTEDHIAWLLQHGWHEKALAVVESGQGRSELLDEVGSRYLDHLIVERKYGEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVALVALATNPSLHKDLLSTVKSWPSVIYSGLPVISAIEPQLNTSSMTDWLKEALAELYVIDGQYEKAFSLYADLMKPEVFDFIEKYNLHDAIREKVVQLMVLDCKRAVPLLIQNRDIISPPEVVKQLKNADNKCDSRYFLHLYLHSLFEVNPHAGKDFHDMQVELYADYDPKMLLPFLRSSQHYTLEKAYEICIKRDLMREQVFILGRMGNSKQALAVIINKLGDIEEAVEFVTMQHDDELWEELIKQCLHKPEMVGILLEHTVGNLDPLYIVNKVPNGLEIPRLRDRLVKIITDYRTETSLRHGCNDILKADCVNLLIKYYKEARHGVSLGNEEDEPRVKMSDTRASQVFEKSPSLRTMELKSKTRGGGRCCICFDPFYIQNVSVIAFFCCHGYHTTCLTDSTYTNSSKKEIEATSQETGTYDDYNGYVDDASDDNEETESGGPRLRCILCTTAAV* 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01030 959 SMART WD40_4 174 210 IPR001680 GO:0005515
Rops3g01030 959 SMART WD40_4 86 125 IPR001680 GO:0005515
Rops3g01030 959 FunFam Vacuolar protein sorting-associated protein 41 homolog 554 819 - -
Rops3g01030 959 SMART ring_2 874 954 IPR001841 -
Rops3g01030 959 MobiDBLite consensus disorder prediction 918 945 - -
Rops3g01030 959 MobiDBLite consensus disorder prediction 1 44 - -
Rops3g01030 959 ProSiteProfiles Clathrin heavy-chain (CHCR) repeat profile. 613 760 IPR000547 GO:0006886|GO:0016192
Rops3g01030 959 CDD RING-H2_Vps8 872 905 - -
Rops3g01030 959 SMART CLH_2 613 760 IPR000547 GO:0006886|GO:0016192
Rops3g01030 959 FunFam Vacuolar protein sorting-associated protein 41 homolog 9 285 - -
Rops3g01030 959 Pfam Region in Clathrin and VPS 613 756 IPR000547 GO:0006886|GO:0016192
Rops3g01030 959 Gene3D Tetratricopeptide repeat domain 642 820 IPR011990 GO:0005515
Rops3g01030 959 PANTHER VACUOLAR PROTEIN SORTING VPS41 14 923 IPR045111 GO:0006623
Rops3g01030 959 MobiDBLite consensus disorder prediction 11 39 - -
Rops3g01030 959 PIRSF Vps41 1 915 IPR016902 GO:0034058|GO:0046907
Rops3g01030 959 Gene3D - 9 283 IPR015943 GO:0005515
Rops3g01030 959 SUPERFAMILY WD40 repeat-like 57 260 IPR036322 GO:0005515
Rops3g01030 959 Coils Coil 10 40 - -
Rops3g01030 959 SUPERFAMILY RING/U-box 867 911 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01030 Rops-Chr3 13356182 13368976 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01030 K20184 - gmx:100804340 1778.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01030 3 13356182 13368976 Rops3g01030 3 13356182 13368976 ECH