Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01029 ATGCAGCCGAATTTGTTCCCCTTTGGAAGCGTGCTTGGGAATCCGTTCATTTTCAATGGCGATTTGAGCAGTAGTGAAGGAGGGATCGATAGTTCTAGGGTTTTCTTCTTGCTTCCTTTCTTCTTGCTCTCTCAAGGAGGAGCAATGGATTTGTCTAAGGTTGGGGAAAAGATCTTGAGTTCCGTTAGGTCAGCGAGATCGCTTGGTTTGTTACCTTCGGTTTCTGATCGGCCTGAGGTACCAGCTCGAGCTACTGCTGCAGCTGCTGTAGCTCGTGCTCTTGCAGGGTTACCACCTCATCAGAGGTATAGTCTTTCATCAAGCTCAGAAGAACTGAGTTCAATATATGGAAGCAGACCTCATGGAAAAGTAGTGGAGGAACTGGAGGACGAATTCTATGAGGAGGATTTTGATCCAATTAGGCATGTTTTGGAGCACCTTCCAGCTGAAGAAAATGAACTACCATATTTTGAAAAACAGGCTGCCCTTAGATTGGCACAACTGGATAGAGTAGCAGAGCGTTTATCTCGCCATGTGATGGAGCATCATGAAGTGATGGTGAAGGGGATGAATTTGGTCAGAGAATTGGAGAAAGACTTGAGAATTGCTAATGTCATTTGTATGAATGGAAGAAGACACTTGACATCATCTATGAATGAGGTTTCAAGGGATCTGATTGTTAATTCCTATTCAAAAAAGAAACAAGCTCTTTCGGACATGCTTCCAGTCTTGACCGAACTTCGACGTGCATTGGACATGCAATTAACACTTGAATCCCTTGTAGAGGAAGGGAATTATTGGAAAGCCTTTCAAGTCCTATCTGAGTATTTGCAACTGTTAGATAGTTTGTCAGAGCTATCAGCAATACAAGAGATGAGTCGTGGTGTGGAGGTTTGGCTGGGAAGAACTTTACAGAAGCTGGATGCTCTTTTATTGGAAGTATGTCAGGAATTTAAGGAAGATGGCTATATAACTGTAATTGATGCATATGCAATAATAGGAGATACTGCTGGTCTTGCTGAAAAGATACAGAGTTTCTTCATGCAAGAAGTTATATCAAAAACACACTCGGTTTTAAAGGCTATCGTGCATGAGGATGAGGAGGGACTTGCGCAAAATAGTAGGCTAACTTACAGCGATCTATGCCTTCAAATACCTGATTCTAAGTTTAGGCAGTGCTTATTAAGAACATTGGCTGTTCTATTTGACCTTATGTGTTCATACCATGAAATTATGGATTTTCAGCTGGAGAGAAAGGACATAGCTGCACAAACCTCAAATAAGTGCCATGAAGACATTTCTTGTAGTCCAGGTGAGGCTCGGGAAGTTGATTCAGATGTAAGAGCCTGCAACAATTCTATGTCCAGTTCTGGAGATATAATACATGGCTCATCTTCTAGGAAGGAATCTTCAACAATCAGCTCACTGACTGAAACGACTGGAACTACTGGCTCACCATACAGTGAGTCTCACGATCCAGTTGTTGAGGCTAGAAAGGAGGACAATTTGGCATCAAGTATTGAATCTCCATGGTACCATCTTCGCAAAGAAGCTACCACATTTGTTTCACAGACCCTTCAAAGAGGACGCAAGAATCTGTGGCATCTCACTGCAAGTCGTATGTCAGTATTGCTTTCTTCTGCTGCAGCTTGTCCTCCAAGCATTCATCAATTCTTGAAAAACTATGAAGATCTCAGAGTATTCATTTTGACTGGGGAGGCCTTTTGTGGAATTGAAGCAGTTGAATTCAGGCAGAAGTTGAAGGTTGTTTGTGATAACCATTTCATAGCTTTTCATCGACAAACTGTGCATGCGCTAAAAATGGTTTTGGAGAAAGAGACTTGGTTAAAATTACCCCCAGATACCGTACAAGTTGTCAGTTTTGCTGGACTTATTGGTGATGGAGCACCCCTGATTTCTTTATCTAGTAGTAAATCAATGAATGCCAATGTAATCCATTCTGATAAATCAGTTAACATGGTTCACACCAGTGCTAGGAAGAGTGGGTTCTCTCATTGGATTAAAAATGGAAACCCTTTTCTGCAAAAATCATCAACCTCCAAAGAAAGTCATGGTTATTCCCATCCTAATGGATCAAGTTATGGTGAATTTGATGGAGGTTCAACCAACAACTTTCATGATGGTAAAGTCTCTCCGAGAAAGAGTGATCCCAATCAATTGAATGGTGCCAACTCTGTTTCAGAAGATGAAAATGAGGATCTACTTGCTGACTTCATTGATGAAGACAGTCAACTTCCAAGTCGAATTTCTAAACCCTATCATTCAAGAACTCACTCTTCACATGGTAATGATGAAGAGAGTACAACACAAACCGGATCTTCTCTATGTGTTTTGAGGTCTATGGATAAATACGCAAGGCTTATGCAGAAATTAGAAGTAGTAAATGTTGAGTTCTTTAAGGGAATATGCCAGTTGTTTGAAATTTTTTTCTATTTTATATATGAAACATTTGGTCAGCAGAGCACTAATTCAAGTGGAAAAGGCTCAACTAACTCTCTTAATTATCGCTTGAGGACAGCCTTATCCAGAATAAATCAAGATTGTGAAGAGTGGATTAAGCCCCAGTCATCTTCACCGACATCTTTGAGTTCATCATTTCCACATGCAGAGTTGACACCTACAAACCCTCCCAATATGAATTTTGGTCACTCTTCAGGGACTTCTTTGGGTCTCAAGGAAAGGTGTGTGGCAGTTGACACCATATCTCTCGTTGCTCGAATACTGAATAGATCCAAATCTCATCTCCAATCAATGCTCTTGCAAAGTAATTCAACTGTACTCGAGGATTTCTATGTTCATCTGGTGGATGCGGTCCCAGATCTTATAGAGCATGTTCATCGCACAACAGTGAGACTATTGCTGCACATTAATGGGTATGTTGAACGTGTTGCCAATTGTAAATGGGAAGTAAAAGAGCTTGGGATGGAGCATAATGGGTATGTTGATTTGCTGCTGGGGGAGTTTAAGCACTATAAAACACGACTTGCTCATGGAGGAATTCGTAAAGAGATTCAAGACCTATTGTTGGACTATGGGCTTGAAATTGTGGCAGAAACTCTTGTCGAAGGACTTTCACGGGTGAAGAGATGTAGTGATGAAGGACGAGCTCTAATGTCGTTGGATCTGCAGGTTTTGATCAATGGGCTACAGCATTTTGTGGCGTTGAATGTGAAGCCCAAGCTACAAATGGTTGAAACTTTCATTAAGGCTTACTACCTTCCCGAGACAGAATACGTGCACTGGGCACGTGCACACCCGGAATACAGTAAGAGCCAGATTGTTGGACTTGTCAACGTTGTTGCCACTATGAAAGGTTGGAAGAGGAAAACCAGAGCTCCGTGTAAAGGAAAGAAAGACAAAGGCGCGGTTGAAAATAGAAAATTATATACCATTATGCCATTCAAAAGAAGAATGGAACTGTAA 3444 0.4132 MQPNLFPFGSVLGNPFIFNGDLSSSEGGIDSSRVFFLLPFFLLSQGGAMDLSKVGEKILSSVRSARSLGLLPSVSDRPEVPARATAAAAVARALAGLPPHQRYSLSSSSEELSSIYGSRPHGKVVEELEDEFYEEDFDPIRHVLEHLPAEENELPYFEKQAALRLAQLDRVAERLSRHVMEHHEVMVKGMNLVRELEKDLRIANVICMNGRRHLTSSMNEVSRDLIVNSYSKKKQALSDMLPVLTELRRALDMQLTLESLVEEGNYWKAFQVLSEYLQLLDSLSELSAIQEMSRGVEVWLGRTLQKLDALLLEVCQEFKEDGYITVIDAYAIIGDTAGLAEKIQSFFMQEVISKTHSVLKAIVHEDEEGLAQNSRLTYSDLCLQIPDSKFRQCLLRTLAVLFDLMCSYHEIMDFQLERKDIAAQTSNKCHEDISCSPGEAREVDSDVRACNNSMSSSGDIIHGSSSRKESSTISSLTETTGTTGSPYSESHDPVVEARKEDNLASSIESPWYHLRKEATTFVSQTLQRGRKNLWHLTASRMSVLLSSAAACPPSIHQFLKNYEDLRVFILTGEAFCGIEAVEFRQKLKVVCDNHFIAFHRQTVHALKMVLEKETWLKLPPDTVQVVSFAGLIGDGAPLISLSSSKSMNANVIHSDKSVNMVHTSARKSGFSHWIKNGNPFLQKSSTSKESHGYSHPNGSSYGEFDGGSTNNFHDGKVSPRKSDPNQLNGANSVSEDENEDLLADFIDEDSQLPSRISKPYHSRTHSSHGNDEESTTQTGSSLCVLRSMDKYARLMQKLEVVNVEFFKGICQLFEIFFYFIYETFGQQSTNSSGKGSTNSLNYRLRTALSRINQDCEEWIKPQSSSPTSLSSSFPHAELTPTNPPNMNFGHSSGTSLGLKERCVAVDTISLVARILNRSKSHLQSMLLQSNSTVLEDFYVHLVDAVPDLIEHVHRTTVRLLLHINGYVERVANCKWEVKELGMEHNGYVDLLLGEFKHYKTRLAHGGIRKEIQDLLLDYGLEIVAETLVEGLSRVKRCSDEGRALMSLDLQVLINGLQHFVALNVKPKLQMVETFIKAYYLPETEYVHWARAHPEYSKSQIVGLVNVVATMKGWKRKTRAPCKGKKDKGAVENRKLYTIMPFKRRMEL* 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01029 1147 MobiDBLite consensus disorder prediction 681 734 - -
Rops3g01029 1147 Pfam Vacuolar-sorting protein 54, of GARP complex 125 414 IPR019515 -
Rops3g01029 1147 PANTHER UNCHARACTERIZED 49 1118 IPR040047 GO:0032456|GO:0042147|GO:1990745
Rops3g01029 1147 MobiDBLite consensus disorder prediction 454 491 - -
Rops3g01029 1147 MobiDBLite consensus disorder prediction 753 780 - -
Rops3g01029 1147 Pfam Protein of unknown function C-terminus (DUF2451) 896 1117 IPR019514 -
Rops3g01029 1147 MobiDBLite consensus disorder prediction 454 489 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01029 K23288 - gmx:100788476 1914.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01029 3 13325563 13345597 Rops3g01029 3 13325563 13345597 ECH