Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops3g01026 ATGGCTCGTAAGAGAGCAGAGAAGTTGGTGGTTAGATCCACCAGGAAAGTTGTGGAATCAAGTGTACAGGTCTCGGTTGTAGGAAGCAGCAAAAGATTAACCAGAGGAAACAAAGATATTAAGACAGGGGAAGAAGAAGAAGTAGGTGCTCTTGGTCAAGAAAATGTGAGGATCATTCCTGTTCAGGAAGTGACTCCTCTTGCCAAAGAGGATGCAAGTACCACAACTATCACCACTACTGATGAAAACAAAACTGAGCAAGGAAATACTCAAAATGGTCAAGTCCAAAATCAAAAGGAAGAGCAAAAGAGGGACCATGTCAAAGAGAAGAAGGCCAAAACAAAAGAAAGGCATGATGGTAAAGAGAAAAGGAAGAGGAAAAGGAGAAGGAAAAGTGAAGGGTACCAAAGGTATGTTTACAGGGTATTGAAGCAAGTGCACCCTGAAATGGGAATATCTTCTAAATGCATGACTATTCTGAATAATTTGATGAATGACATGTTTGAGAGGCTAGCTGATGAGGCTGCCAAGCTGAAGAACTACACTGGGCATATGACATTGTCATCAAGGGAGATTCAAGGAGCAGTGAAGCTGGTTTTGCCTGGGGAGCTTGGGAAGCATGCCATTGCTGAAGGAGTCAAAGCTGTGAACACCTACACATCCTATGATACCTGA 675 0.4281 MARKRAEKLVVRSTRKVVESSVQVSVVGSSKRLTRGNKDIKTGEEEEVGALGQENVRIIPVQEVTPLAKEDASTTTITTTDENKTEQGNTQNGQVQNQKEEQKRDHVKEKKAKTKERHDGKEKRKRKRRRKSEGYQRYVYRVLKQVHPEMGISSKCMTILNNLMNDMFERLADEAAKLKNYTGHMTLSSREIQGAVKLVLPGELGKHAIAEGVKAVNTYTSYDT* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops3g01026 224 MobiDBLite consensus disorder prediction 68 97 - -
Rops3g01026 224 Coils Coil 97 117 - -
Rops3g01026 224 PANTHER HISTONE H2B 108 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 MobiDBLite consensus disorder prediction 98 116 - -
Rops3g01026 224 Pfam Core histone H2A/H2B/H3/H4 83 198 IPR007125 GO:0003677
Rops3g01026 224 MobiDBLite consensus disorder prediction 62 132 - -
Rops3g01026 224 SUPERFAMILY Histone-fold 107 221 IPR009072 GO:0046982
Rops3g01026 224 Gene3D Histone, subunit A 92 222 IPR009072 GO:0046982
Rops3g01026 224 SMART h2b3 125 221 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 FunFam Histone H2B 77 222 - -
Rops3g01026 224 MobiDBLite consensus disorder prediction 117 132 - -
Rops3g01026 224 PRINTS Histone H2B signature 154 174 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 PRINTS Histone H2B signature 135 153 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 PRINTS Histone H2B signature 176 193 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 PRINTS Histone H2B signature 206 219 IPR000558 GO:0000786|GO:0003677|GO:0030527
Rops3g01026 224 PRINTS Histone H2B signature 193 206 IPR000558 GO:0000786|GO:0003677|GO:0030527
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops3g01026 Rops-Chr3 13264726 13265400 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops3g01026 K11252 - gmx:100786873 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Rops3g01026 3 13264726 13265400 Rops3g01026 3 13264726 13265400 ECH